Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00987 ATGGCGGAGCTGAGTCAATGGTCCTTCTACAGGGCTCTCATCGCTGAGTTTATTGCTACACTTCTCTTCCTCTACGTTGGTGTTGCCACGGTCATTGGAAACAACAAGCTACCCGCCGGTAGTTGCGATGGTGTTGGCCTTCTCGGCATAGCTTGGGCGTTCGGCGGCATGATATTCATCCTCGTTTACTGCACCGCCGGAATTTCAGGCGGTTTCCTTTTTGGTGGGTTTGTGTTCTCAGGTGGTCATATCAACCCAGCTGTAACGGTAGGATTGTTCTTGGCTAGGAAGTTATCTCTAATCAGGGCCATAGCTTACATAATTGCTCAGTGCTTGGGAGCCATCGTCGGAGTTGGGTTAGTGAAGGCCTTCATGACTCAGCCTTACGTCGATAATGGCGGCGGAAATAACCTCGTGCAACCAGGCTACAGCAAAGGCACAGCAGTGGGTGCTGAAATCATCGGCACTTTTGTACTTGTCTACACTGTCTTCTCAGCGACTGACCCCAAAAGAAGCGCTCGCGACTCTCACGTCCCTGTTTTAGCTCCGTTGCCAATTGGATTTGCTGTGTTTATGGTTCACTTAGCTACCATCCCCATCACTGGCACTGGCATCAACCCAGCTAGAAGCTTAGGCGCTGCAGTGATCTACAACAAAAAGAAAGTCTGGAACGAACATTGGATCTTCTGGGTTGGTCCTTTAGTTGGTGCTCTGGCTGCGACAATATATCATCAGTACATTCTCAGAGCAGCTGCCATTAAAGCTCTGGGGTCCTTCCGTAGCAACCCTACCAACTAA 798 50.0 MAELSQWSFYRALIAEFIATLLFLYVGVATVIGNNKLPAGSCDGVGLLGIAWAFGGMIFILVYCTAGISGGFLFGGFVFSGGHINPAVTVGLFLARKLSLIRAIAYIIAQCLGAIVGVGLVKAFMTQPYVDNGGGNNLVQPGYSKGTAVGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKKKVWNEHWIFWVGPLVGALAATIYHQYILRAAAIKALGSFRSNPTN 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19958937 19959983 - Bda029663.1 Bda08g00987 11843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00987 265 Pfam Major intrinsic protein 3 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bda08g00987 265 CDD MIP 11 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bda08g00987 265 SUPERFAMILY Aquaporin-like 3 249 IPR023271 -
Bda08g00987 265 TIGRFAM MIP: MIP family channel proteins 15 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bda08g00987 265 PANTHER AQUAPORIN PIP2-1 2 265 - -
Bda08g00987 265 Gene3D Glycerol uptake facilitator protein. 1 265 IPR023271 -
Bda08g00987 265 PRINTS Major intrinsic protein family signature 11 30 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bda08g00987 265 PRINTS Major intrinsic protein family signature 151 169 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bda08g00987 265 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bda08g00987 265 PRINTS Major intrinsic protein family signature 187 209 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bda08g00987 265 PRINTS Major intrinsic protein family signature 227 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bda08g00987 265 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bda08g00987 265 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Bda08g00987 265 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 2 265 IPR034294 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda08g00987 Bda15g01030 CCT
Bda08g00987 Bda14g00620 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00987 Bda-Chr8:19958937 Bda09g01459 Bda-Chr9:46436180 3.74E-140 dispersed
Bda15g01030 Bda-Chr15:19294203 Bda08g00987 Bda-Chr8:19958937 2.56E-146 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00987 K09872 - csv:101209627 424.091