Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g01041 ATGGAGTGTAACAAGGAGGAAGCTGTCAGGGCGATGGAAGTAGCTGAAAAGAAGTTGCATGGCAGTGACTATATGGGTGCAAGGAAGATGGCTCAAATGGCTCAACGACTCTATCCCGAGCTTGAAAACATTAACCGGTTACTTGCAGTTATTGAGGTGCACTGTTCAGCAGAGAATAAAATATCTGCTTTGGAGTATGACTGGTATGGTATTCTTCAGATTCAACAGTCGGCTGACCAAGAAGCTATAAGAAAGCAATATAGAAAGCTTGCATTGTTACTTCATCCTGATAAAAACAAGTTTGTTGGTGCAGAAGCTGCTTTTAAACTTATTGGTGAAGCGAATAGGCTGCTTACAGACCAGATGAAACGAACAGTATATGACATGAAGTTGAGGGCATCGCAAAATACTGACCCACATGAGCTCAATAACCGTGCCAAAAGGCCTACCAAGAAACAGAATGTAGCTTCAAATAGTTTCCAGAATGTTTCTCAATCACAGTCCGGTGGCATTAATAAGCCAGAACCGCAAACTTTCTGGACTGCTTGCCCCTTCTGTAACATGAGGTTTCAATATCTGAAAACTTATGTAAATAGAATGTTACGTTGCCAAAGTTGTGGTAAAGTCTTCATCGCCCATGATTTGGGCAACCAAAATCTGCCTCATGGATCCTCGGTGGGTCATACTCCTGCACAGAACGTCCCTTCAGATCCAGTATCCTCAAAGGTTGCTTCAGACACTTCTCGAGATAAAAGAGCTAATGATACATTAAAGACGGGTAAAACTTCTGAGATTGGCTCAGGTTTAAAAGCGGAGCAACATCAGAAATGTGTTAATGTTGGTATGAAAGGAAACAAGGAAGGTAAGACTTTCAGATCTGGGGAAGCGAAGTCCAAGGGACAGGAGGTACCAGAGGATGAACTAAAGAAGAGGAAAAGGAAGTCAGGTGTCGAATCCGATGGTGGTGATATGAATAGAAAGTCAGATGCAGAATTTAGTAGAAGTGGCAGAAGAATTTATGTAGCCAATGAAGAAAATAATGTTGATTTATCTAGACAGAATTCTGGTGTTACTGGAAACAGTTACACTCGAAAATCACCAAGAAATAAGCAGCATTATTATGACAAGGAGAATTGTACCAATGATTTTGCGAGCCAAAAAGTGTCAAAGGAAAGTAAATCATCAAGTGGCAACAAAGTGGAGATGAGAGATTGCGCTGGAGATATTGGAGTGACCAATGCTAATAATTTTTCTGCTCACACAACTGTAGAAGGAGACGGTGAAGAGATCAAACAGCAATCACCAACTTTTGCTGAAGAAGGTTTGGTTTACAAAAAAAGAAAAAGTGGGGAAAGCAAGGAAATGATGGCAGAAACACTAGTGACAGATCACAGTAATACAAAAACACAAAAGGTTGATTGTGATACAAGTTCAATGGACAGACAGAAAATTAATTTAATTGATGCTCCTCAGCCAGACTTTAGTGACTTCGACAAGGATAGGACAGAAAACATATTTGCTGCTAATCAAATGTGGGTAGTTTATGATATGAATGATAGCATGCCAAGATTCTATTGCATTGTAAGGAAAGTTTTATTCCCTGGATTCAAACTAAAGATCACTTGGTTGGAGCCCAATCCAGTTAACAAAGAAGAGAGAGATTGGTGTAATGTAGAACTGCCTGTTGCTTGTGGGAAGTTCAAACTTGGCGAGCCTCAAGATACGTCAGATATTTTAATGTTCTCTCATTTGAAAAATAATATTCTGCGCAATGGTAGGAATTCATATTTAATCTATCCTTGTAAGGGAGAAACCTGGGCCCTCTTCAAGGATTGGGATATCAGATGGAGCTCCAATCCAGCAAGTCATGTGCTGTACAAATATGAATTTGTTGAAGTCTTGTCAGATTTTGATGAAGATGCTGGCATTGAAGTTGCCTATTTGTGCAAAGTTACTGGGTTTGTCAGCCTGTTTCAGCGATCTAAGGTGAGTGGAGGTCAATCGTTTAAAATTTCTCGCGACGAGCTCTATAGATTTTCTCATCAAGTTCCCTCACACGTAATGACTGGTGAGGAAAGAGATGGTGTGCCTAAAGGATCTTTCGAACTTGATACTGCTGGACTGCCTCTTGATATTTTTGAGGATGGTTCTGCCTGTGATGTCAATTTGGAGAATGGCGGTGTGGCCTCGAAAGTGAGTTCTCTCTCTGCTAAATCCCCAGAAAAGGAAGCTGCATCTGAGAAAATTGAGGTGGCAAAAGAACAAGAGAAGGATGATTCTGGAAGAGGGGCATCAATGCCCAGACAAAACGAAAAGGGATCGAAGGAGATGGGTGTGAATCAATCTAGTCAAGTAAATGCAAATCAAAATATGTCTAAAACAGCTGGTTGCAAGGGAAGCAACGGTAATAATTCTCTGTGCAAGGAAAGTGCTACAGCAGAAAAACCAAGGACGAGTAATAAGCTTGTTGAAACTGAATCAGTGCTGAGAAGATCACCGAGGGACTTGAGAAAGAAATGCTCTGTACAAAATGTGTTGGAAGAGTTTAGTGATCAAGATATTTGCAAAAGTGAAAACATTGGCAATTCAAGGAGAAGCTTCAATTCTTCTGAGAGAGATTCTTCAGCTAAAATCCCTATTAACTCTCCATCAAAATTTCCGGGTTTAACTCCAATACATGATTTAAATGGAGAGAAATCCGGAGACAAATTTCATCTGAACCAGATTTGGGCAATGTACAATGATAGGGATCGCATGCCCACTGTCTACGCTCAAGTTAAAAAGATTGAGGTCAATCCCAGTTTACTGTTGCATGTAGCATTTCTTGAACCTGTACCCCAGGAAAAAGACGCAACAAATCAGCCTTGTTTGGGGGCATTCAAAGTGAAGGATAGCAAACTGAAGGCTTTTTCACCATCCTCATTTTCGCATTGTTTGAGCACAAAGCCCATCGGGAAGGACAAATATGAAATTTACCCCTGGAAAGGTGAAATTTGGGCAATGTACAAGAATTTGAGTTCTGAACTGCCAGGAAAGAGTGAGTATGACATAGTCGAAGTGGTTGAAAATGGAGATCAAGCAACTACAGTCGCAATTCTCACTCGTCTGAAAGAATATCAATCAGTTTATAAACCTCCCAGAATTCAGAGATCAAAATCGGGTATCATCGATGTGCCACGGCATGATTTAGCTAGATTTTCCCACCAGATTCCAGCTTTTCGGCACACAGGAGAAACAGATAAGTCACTGAAAGGGTGTTGGGAGCTTGATTCCTTAGCAACACCTGCTTCTTTACTTGTTTAA 3303 40.69 MECNKEEAVRAMEVAEKKLHGSDYMGARKMAQMAQRLYPELENINRLLAVIEVHCSAENKISALEYDWYGILQIQQSADQEAIRKQYRKLALLLHPDKNKFVGAEAAFKLIGEANRLLTDQMKRTVYDMKLRASQNTDPHELNNRAKRPTKKQNVASNSFQNVSQSQSGGINKPEPQTFWTACPFCNMRFQYLKTYVNRMLRCQSCGKVFIAHDLGNQNLPHGSSVGHTPAQNVPSDPVSSKVASDTSRDKRANDTLKTGKTSEIGSGLKAEQHQKCVNVGMKGNKEGKTFRSGEAKSKGQEVPEDELKKRKRKSGVESDGGDMNRKSDAEFSRSGRRIYVANEENNVDLSRQNSGVTGNSYTRKSPRNKQHYYDKENCTNDFASQKVSKESKSSSGNKVEMRDCAGDIGVTNANNFSAHTTVEGDGEEIKQQSPTFAEEGLVYKKRKSGESKEMMAETLVTDHSNTKTQKVDCDTSSMDRQKINLIDAPQPDFSDFDKDRTENIFAANQMWVVYDMNDSMPRFYCIVRKVLFPGFKLKITWLEPNPVNKEERDWCNVELPVACGKFKLGEPQDTSDILMFSHLKNNILRNGRNSYLIYPCKGETWALFKDWDIRWSSNPASHVLYKYEFVEVLSDFDEDAGIEVAYLCKVTGFVSLFQRSKVSGGQSFKISRDELYRFSHQVPSHVMTGEERDGVPKGSFELDTAGLPLDIFEDGSACDVNLENGGVASKVSSLSAKSPEKEAASEKIEVAKEQEKDDSGRGASMPRQNEKGSKEMGVNQSSQVNANQNMSKTAGCKGSNGNNSLCKESATAEKPRTSNKLVETESVLRRSPRDLRKKCSVQNVLEEFSDQDICKSENIGNSRRSFNSSERDSSAKIPINSPSKFPGLTPIHDLNGEKSGDKFHLNQIWAMYNDRDRMPTVYAQVKKIEVNPSLLLHVAFLEPVPQEKDATNQPCLGAFKVKDSKLKAFSPSSFSHCLSTKPIGKDKYEIYPWKGEIWAMYKNLSSELPGKSEYDIVEVVENGDQATTVAILTRLKEYQSVYKPPRIQRSKSGIIDVPRHDLARFSHQIPAFRHTGETDKSLKGCWELDSLATPASLLV 1100
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21865316 21868618 + Bda029735.1 Bda08g01041 11897

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g01041 1100 MobiDBLite consensus disorder prediction 422 443 - -
Bda08g01041 1100 MobiDBLite consensus disorder prediction 731 830 - -
Bda08g01041 1100 MobiDBLite consensus disorder prediction 149 173 - -
Bda08g01041 1100 Pfam Domain of unknown function (DUF3444) 893 1078 IPR024593 -
Bda08g01041 1100 Pfam Domain of unknown function (DUF3444) 487 692 IPR024593 -
Bda08g01041 1100 MobiDBLite consensus disorder prediction 132 173 - -
Bda08g01041 1100 MobiDBLite consensus disorder prediction 221 401 - -
Bda08g01041 1100 SMART dnaj_3 66 123 IPR001623 -
Bda08g01041 1100 Pfam DnaJ domain 67 128 IPR001623 -
Bda08g01041 1100 PANTHER - 1 715 - -
Bda08g01041 1100 MobiDBLite consensus disorder prediction 741 765 - -
Bda08g01041 1100 Gene3D DnaJ domain 64 174 IPR036869 -
Bda08g01041 1100 MobiDBLite consensus disorder prediction 859 887 - -
Bda08g01041 1100 CDD DnaJ 67 120 IPR001623 -
Bda08g01041 1100 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 739 1097 - -
Bda08g01041 1100 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 1 715 - -
Bda08g01041 1100 SUPERFAMILY Chaperone J-domain 62 133 IPR036869 -
Bda08g01041 1100 MobiDBLite consensus disorder prediction 346 367 - -
Bda08g01041 1100 MobiDBLite consensus disorder prediction 774 826 - -
Bda08g01041 1100 MobiDBLite consensus disorder prediction 288 334 - -
Bda08g01041 1100 MobiDBLite consensus disorder prediction 221 243 - -
Bda08g01041 1100 MobiDBLite consensus disorder prediction 378 395 - -
Bda08g01041 1100 MobiDBLite consensus disorder prediction 244 258 - -
Bda08g01041 1100 MobiDBLite consensus disorder prediction 859 881 - -
Bda08g01041 1100 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
Bda08g01041 1100 PANTHER - 739 1097 - -
Bda08g01041 1100 PRINTS DnaJ domain signature 87 102 IPR001623 -
Bda08g01041 1100 PRINTS DnaJ domain signature 69 87 IPR001623 -
Bda08g01041 1100 PRINTS DnaJ domain signature 103 123 IPR001623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g01041 - - - zju:107412112 814.683
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01217 Bda-Chr3:15180691 Bda08g01041 Bda-Chr8:21865316 4.69E-18 dispersed
Bda11g01344 Bda-Chr11:14962299 Bda08g01041 Bda-Chr8:21865316 8.35E-16 transposed
Bda11g01359 Bda-Chr11:15838678 Bda08g01041 Bda-Chr8:21865316 6.93E-13 transposed
Bda15g00989 Bda-Chr15:18290884 Bda08g01041 Bda-Chr8:21865316 8.78E-20 transposed
Bda01g01702 Bda-Chr1:53039338 Bda08g01041 Bda-Chr8:21865316 4.94E-30 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g110 . . . Bda08g01041 . . Bma05g00412 . . . Cma02g00330 Cma20g00770 Car02g00210 Car20g00673 . . . . . . . . . . . . . . . . . . . . Cone10ag1184 Lsi10g00462 . Chy11g00296 . . . . . . . . . . Cmo02g00325 Cmo20g00770 . . . . Cpe16g00296 . Bhi10g01892 . . . Hepe08g0946 . . Cla02g01114 Cam02g1187 . . Clacu02g1177 Cmu02g1137 . . Csa02g01353 . Cme11g00418
Vvi14g366 . . . . . . . . Cmo10g01187 Cmo11g01141 . . . . . . . Bhi02g02125 . . . . . . . . . . . . . . . . . Lsi06g00175 . Chy02g01118 . Blo17g00611 Blo18g00593 . Bda08g01041 Bpe05g00257 . . Bma05g00308 . . . Cma10g01107 . Car10g00957 . Cpe04g00133 . . . . . . . . Cla03g01594 Cam03g1672 Cec03g1718 Cco03g1717 Clacu03g1696 Cmu03g2246 Cre03g1923 . Csa01g02825 . Cme02g00143
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004932 3 2 2 1 1 1 2 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 0 1 1 4 3 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g01041 Bda_Chr08 FPKM 88.118385 107.363625 11.168012 10.028817 26.136936 27.829315 26.846645 0.470629 0.120072