Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g01073 ATGGGTTTTCTTTCTAATAATATCTTCATCATTTTCTTCATCATTTTCATGCCTTTTTCCTTCCAAAACACCCGCATGTTTATTGCTCAAGGACAGTGGATTGCAGGGAAGGGCTTCCATGGGCTTCCCTTAAAGCAGCTTGATTTCATGGAGGAAAATGGCGGTGGAAATCAAAGGAGCAAGATAAAGAGAGAGGCTGGAGTTGACGAGAGTGAAGAAAAGGAGATTTTTATAGTTGAAAAGTTCAGAGCTTTACTTGGATTCAAAAACCCATCAAATGCTGACTCTGCAGAAAGTTATTCTCCTTCTCCTTCTCCACTGTCCGCCATTGAAGTTCCAGCTCCAGCTCCTCTTCCATCCTTTCCTACCCATAATCGTTCTCATCCTCCACTGCATCATTCTCGAGGGGCTAAAAATGGCCACAAAGAACAACCCCAGAATGAAGATGAAGCCAATGTCAGAACTCTGGTTGCAGTTCTTGTCCCTACAGGAGCAGCCATTTTGATTTGTGCTCTTGGGTTCTTCTGGGTCTGCAAGAAATTCAGAAAACAGAGAAAGAAATCCATAAGAACGATTTCAGAGACTGAAAAAAAAGGAGTCAGAACGGCTGCCTCAAAGTGTGCTAATCCTCAGAAATCAGACAAGAACAAGGTAAGCTCAAATCATGGCCTTGATGAACTCTTTTATCTAAATTCACTAGAAATGGATTTGGAGCAACAAAGTTCTTATCCTGTGAAAACCTCCTTAAATCATAACACACCTGAATTCAACAGCCAAGAAATTTTATATCCTGAAAAATATAATCTGAGTAATACTTCCTCGAAAGAAATTCAGTCCATCCATGAGGACGAAACAGAATCGATCAAATTCGAATCTGACTGCGCTGATTCTTCATTTGCCGATAGAATTCTTTCGGTTGAAATGCATTTGTCGGACAGCGAATCATTCCATTCTTTGGTCGATTCACATTCATCAATGGCTCGCCTCTTTTCATCTTCTCGATCTTCTCCTTATTCAACTAGAATCGGAAATAAAGCTTCATCTTCTTCCACATTGCCAAATTTCTCATCACCATTGAAGTTGGATTCTTCTTCGGGATCCATTCCAACCCCGCGACAGGATTTGACTTCTTTGAATAAAAAACAAGCTAAGCAATCTCCGCCAGTCCCACTGACTATTCCTCCACCGCCCTGCCCGCCAGGAAATAATTTCTCTATCAAGACTCCACCGCCTCTCCCCTCTCAACATCCTCATTTTGCACCACTGGGAAAAGATGGATCGCCACTTCCAAAACTCAAGCCACTTCATTGGGACAAAGTTAGAGCTACGCCTGATCGTTCAATGGTGTGGGACAAGCTGCGTTCGAGCTCGTTTGAGCTAGATGAGGAAATGATAGAGTCGCTTTTCGGATACAATTTACAAAATTCAGCAAAGAACGACGATACTAAGAGCAAGAGCCCCTCTCCAAGCAAACATATACTCGAGCCGAAGAGACTCCAGAACTTAACCATACTCTTTAAAGCCTTAAATGTGACTGCAGAGCAAGTATGTGAAGCATTAGAACAAGGGAATGGCTTGAGATTAGCACAAATAGAAGCACTTGTAAAAATGGTACCAACCATGGAAGAAGAGGTGAAGCTATCGAGCTACAAAGGAAACTTTAACGATCTGGGATCTGCAGAGAGATTCGTGATAGTAGTTTTGAGAATTCCATTTGCCTTTCAGCGGGTCGAAGCCATGCTTTACCGTGAAACTTTCGAGGACGAGGTCGTTCATCTCAGAAACTCATTTTCAATGCTAGAGGATGCTTGCAAGGAACTAAGGTCTAGCAGGCTGTTCTTGAAGTTACTCGAAGCTGTGCTAAAAACGGGAAATCGTATGAACGTTGGAACAATCAGAGGAGGCGCAAAAGCGTTCAAACTAGATGCTCTCCTCAAACTGGCTGATGTGAAAGGAACAGACGGTAAAACCACTCTACTTCATTTTGTGGTTCAAGAAATAATTCGATCAGAAGGAATTAGAGTTTCCGAGAGCATAATGGGGAAAATCAGCCAGAAAAACAAAAGCAAAACGGCTCAAGAGAGGGAAGAATATTACAGAAAAATGGGTCTAGATCTCGTATCTGGTCTAAGCACAGAACTCTACAATGTGAAGAAAACAGCATCCATAGACATGGATGTTCTCGCTACTTCAGTTTCATATCTCTCAGAAGGAATCGCAAAGCTATTACGTCTGGTACACAAGGATTTGTGCGTCGATCAAAGAAGTGAAACTTTCATAAACTCGATGAAATCTTTTATAAATTATGCAGAGAGTATCCTGAAAGAGATGCAGGAAGATGAAAATAGAGTGCTCCTGAGAGTAAAAGAAATTACCGAGTATTTCCATGGCGATTTGAGCAGAGAGGAAGGAAACCCACTTAGAATCTTTGTGATAGTGAGAGATTTTCTGGGTATGTTGGATCATGTCTGTAAAGAGTTGAGAAGTTCGAAAGCTGGTCGGAGCCGGAGCCCTCTCGCTCCATTTAGATAG 2532 41.98 MGFLSNNIFIIFFIIFMPFSFQNTRMFIAQGQWIAGKGFHGLPLKQLDFMEENGGGNQRSKIKREAGVDESEEKEIFIVEKFRALLGFKNPSNADSAESYSPSPSPLSAIEVPAPAPLPSFPTHNRSHPPLHHSRGAKNGHKEQPQNEDEANVRTLVAVLVPTGAAILICALGFFWVCKKFRKQRKKSIRTISETEKKGVRTAASKCANPQKSDKNKVSSNHGLDELFYLNSLEMDLEQQSSYPVKTSLNHNTPEFNSQEILYPEKYNLSNTSSKEIQSIHEDETESIKFESDCADSSFADRILSVEMHLSDSESFHSLVDSHSSMARLFSSSRSSPYSTRIGNKASSSSTLPNFSSPLKLDSSSGSIPTPRQDLTSLNKKQAKQSPPVPLTIPPPPCPPGNNFSIKTPPPLPSQHPHFAPLGKDGSPLPKLKPLHWDKVRATPDRSMVWDKLRSSSFELDEEMIESLFGYNLQNSAKNDDTKSKSPSPSKHILEPKRLQNLTILFKALNVTAEQVCEALEQGNGLRLAQIEALVKMVPTMEEEVKLSSYKGNFNDLGSAERFVIVVLRIPFAFQRVEAMLYRETFEDEVVHLRNSFSMLEDACKELRSSRLFLKLLEAVLKTGNRMNVGTIRGGAKAFKLDALLKLADVKGTDGKTTLLHFVVQEIIRSEGIRVSESIMGKISQKNKSKTAQEREEYYRKMGLDLVSGLSTELYNVKKTASIDMDVLATSVSYLSEGIAKLLRLVHKDLCVDQRSETFINSMKSFINYAESILKEMQEDENRVLLRVKEITEYFHGDLSREEGNPLRIFVIVRDFLGMLDHVCKELRSSKAGRSRSPLAPFR 843
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23385183 23388160 - Bda029788.1 Bda08g01073 11929

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g01073 843 PANTHER FORMIN-RELATED 52 843 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Bda08g01073 843 MobiDBLite consensus disorder prediction 97 149 - -
Bda08g01073 843 Pfam Formin Homology 2 Domain 426 820 IPR015425 -
Bda08g01073 843 MobiDBLite consensus disorder prediction 108 124 - -
Bda08g01073 843 ProSiteProfiles Formin homology-2 (FH2) domain profile. 422 843 IPR015425 -
Bda08g01073 843 Gene3D Formin, FH2 domain 423 832 IPR042201 -
Bda08g01073 843 PANTHER FORMIN-LIKE PROTEIN 52 843 - -
Bda08g01073 843 SUPERFAMILY Formin homology 2 domain (FH2 domain) 395 830 - -
Bda08g01073 843 MobiDBLite consensus disorder prediction 332 386 - -
Bda08g01073 843 MobiDBLite consensus disorder prediction 388 417 - -
Bda08g01073 843 MobiDBLite consensus disorder prediction 332 433 - -
Bda08g01073 843 SMART it6_source 422 835 IPR015425 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g01073 - - - twl:120009171 839.336
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g01073 Bda-Chr8:23385183 Bda14g01277 Bda-Chr14:13667115 6.66E-134 dispersed
Bda08g01073 Bda-Chr8:23385183 Bda11g01477 Bda-Chr11:21468272 5.29E-138 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda11g01477 . 397 850 FH2 protein (formin) Gene Family AT3G25500 58.5 1.3e-133 474.6
Bda14g01277 . 431 867 FH2 protein (formin) Gene Family AT3G25500 60.0 1.7e-133 474.2
Bda08g01073 . 394 826 FH2 protein (formin) Gene Family AT3G25500 52.6 3.4e-110 396.7
Bda07g01671 . 463 718 FH2 protein (formin) Gene Family AT3G25500 69.9 3.2e-92 337.0
Bda11g01477 . 415 871 FH2 protein (formin) Gene Family AT2G43800 53.8 3.5e-124 443.0
Bda14g01277 . 444 879 FH2 protein (formin) Gene Family AT2G43800 54.5 8.1e-121 431.8
Bda13g00633 BCT 159 433 FH2 protein (formin) Gene Family AT4G15200 50.7 2.1e-56 216.9
Bda07g00336 BCT 379 528 FH2 protein (formin) Gene Family AT4G15200 62.9 3.1e-47 186.4
Bda07g00336 BCT 391 848 FH2 protein (formin) Gene Family AT5G54650 63.7 9.9e-159 557.8
Bda13g00633 BCT 299 756 FH2 protein (formin) Gene Family AT5G54650 63.4 1.0e-155 547.7
Bda06g00343 BCT 284 727 FH2 protein (formin) Gene Family AT5G54650 59.9 1.2e-148 524.2
Bda08g01073 . 425 831 FH2 protein (formin) Gene Family AT5G54650 52.0 1.1e-109 394.8
Bda11g01477 . 429 835 FH2 protein (formin) Gene Family AT5G54650 50.5 4.1e-104 376.3
Bda09g00382 BCT 187 493 FH2 protein (formin) Gene Family AT5G54650 58.9 6.1e-92 335.9
Bda14g01277 . 35 886 FH2 protein (formin) Gene Family AT5G67470 54.0 1.6e-212 736.5
Bda11g01477 . 35 878 FH2 protein (formin) Gene Family AT5G67470 55.1 1.0e-208 723.8
Bda08g01073 . 430 829 FH2 protein (formin) Gene Family AT5G67470 53.4 2.5e-109 393.7
Bda07g01671 . 467 735 FH2 protein (formin) Gene Family AT5G67470 54.4 1.2e-63 241.9
Bda10g01006 . 250 727 FH2 protein (formin) Gene Family AT1G59910 50.4 1.0e-118 424.9
Bda10g01006 . 127 724 FH2 protein (formin) Gene Family AT1G70140 50.2 6.9e-137 485.0
Bda11g01477 . 413 835 FH2 protein (formin) Gene Family AT3G05470 50.2 4.6e-108 389.4
Bda14g01277 . 448 850 FH2 protein (formin) Gene Family AT3G05470 50.4 4.7e-105 379.4
Bda11g01706 BCT 4 162 FH2 protein (formin) Gene Family AT1G31810 59.4 1.3e-39 162.5
Bda14g00861 BCT 1539 1858 FH2 protein (formin) Gene Family AT5G07650 71.6 2.6e-123 439.9
Bda03g00096 . 354 676 FH2 protein (formin) Gene Family AT5G07650 60.7 6.8e-103 372.1
Bda11g01706 BCT 4 153 FH2 protein (formin) Gene Family AT5G07650 70.2 8.7e-50 195.7
Bda14g00861 BCT 1449 1853 FH2 protein (formin) Gene Family AT5G07770 63.1 1.6e-133 473.4
Bda03g00096 . 353 669 FH2 protein (formin) Gene Family AT5G07770 58.4 5.1e-95 345.5
Bda11g01706 BCT 4 146 FH2 protein (formin) Gene Family AT5G07770 66.7 1.1e-44 178.3
Bda14g00861 BCT 1463 1858 FH2 protein (formin) Gene Family AT3G32400 64.3 3.1e-138 488.8
Bda03g00096 . 353 676 FH2 protein (formin) Gene Family AT3G32400 73.5 2.1e-126 449.5
Bda11g01706 BCT 4 153 FH2 protein (formin) Gene Family AT3G32400 62.9 2.7e-41 166.8
Bda11g01706 BCT 4 153 FH2 protein (formin) Gene Family AT2G25050 65.6 1.8e-43 175.3
Bda14g00861 BCT 1464 1858 FH2 protein (formin) Gene Family AT5G07780 59.9 2.4e-116 416.0
Bda03g00096 . 353 676 FH2 protein (formin) Gene Family AT5G07780 56.7 2.6e-86 316.2
Bda11g01706 BCT 4 153 FH2 protein (formin) Gene Family AT5G07780 70.2 1.9e-44 177.2
Bda11g01706 BCT 4 160 FH2 protein (formin) Gene Family AT5G07740 75.3 2.0e-56 218.8
Bda14g00861 BCT 1538 1867 FH2 protein (formin) Gene Family AT5G07760 69.3 6.7e-120 428.7
Bda03g00096 . 353 676 FH2 protein (formin) Gene Family AT5G07760 61.2 2.8e-102 370.2
Bda11g01706 BCT 6 149 FH2 protein (formin) Gene Family AT5G07760 69.0 4.6e-44 176.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006698 1 1 1 1 1 1 2 2 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g01073 Bda_Chr08 FPKM 0.0 0.0 0.0 0.0 10.427979 19.124138 13.76678 0.0 0.0