Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g01087 ATGGCTTACGGGAATGATTCCAAAAAGAGGAAGAGATATGCAATGGTGGGTGTTTCAGGTTTGTTACTCGTCGCTATGGTTGTGGCCGTGACGGTCGGAGTTAACTCGAACGGCAGCAGTGATAACTCTACGACAAGCAGCGACACCACCGAATTGTCTGCTTCAATGAAATCCATTCAGTCCATTTGCCAACCCACGACCTATAAACAAGAATGTGTTGAGAGCCTCAAATCTTCAAACTCGAGTGATCCAAAGGAACTCATTCAGGTTGGCTTCAAAGCCGCCATGAAATACGTCAATGAGGCTGCTAAGAAATCGGTTACCTTGCAAGAGATCGAGAAAGACCCGAGGGCTGCCAAAGCTCTTGCCGGTTGTAAAGAACTCATGGACTTCGCCATTGGCGAGCTCAAGCATTCGTTCAACAAGTTGGGTGAATTCGACATCACAAAGATTGATGAAATGCTCATAGACTTGAGAATTTGGCTTAGTGCTACCATCACGTACCAAGAAACTTGCTTGGATGGGTTTCAAAACACAACAAGCAACGCCGGGGAGAAGATGAAATCAGCTTTGAAGACTTCCATGAGGCTAACCAGCAATGGCCTAGCCATGGTCACAGAGATGTCCTCCCTTCTAACGGACTTACAAATTCCGGGGATCAGCCGTAGGCTTCTATCCGATGACCTTCCCGTCCTCGGCCATGACGAGTTCCCGGTCTGGTTCAACCCCGGCCTCAGGAGACTCCTCCAAGCTCCGGCTTCAAGCGTGAAGGCCGACATCGTCATTGCCAAGGATGGAAGTGGAACATATAAGACCATAAATGAAGCACTAACTGACATCCCTAAGTACAGCAATACTACCTTTGTGATTTACATCAAGGAAGGTGTTTATGATGAAACTGTCCATTTCAACAAAACCATGACCCATCTGCTCGTCATCGGTGACGGCCCGACCAAAACCCGCATCACCGGAAGCAAAAACTTCATCGACGGCACCCCCACCTTTAAGACTGCAACAGTCGCCGTTCTTGGGGATTACTTCACTGCAAAGGACATTGGATTTGAAAATACTGCAGGGGCTGAGAAACACCAGGCGGTCGCGTTGAGAGTCCAATCCGACTTCTCAGTCTTCTACAACTGCGCAATGGATGGTTACCAAGACACTCTATATGCTCATGCAAAGCGACAGTTCTATCGCGATTGCGAGGTCTCTGGTACTATTGACTTCGTTTTCGGCGATGCTGCTGCCGTCTTCCAAAACTGCACGTTCTTAGTCAGGAAGCCATTGGAGAACCAGCAAACAATCGTGACCGCCCAAGGAAGAAAGGATAGAAGACAACCATCAGCATTGGTCCTCCAGAAGTGCAAGATCACTTCCGCGCCTGAGTATTTTCCTGTCAGAAAGCAATTCAGAGCATTCCTTGGTCGGCCATGGAAGGAGTACTCAAGGACAATAATCATGGAATCATTCATTGATGATTTGATTCAGCCAGAAGGTTGGCTCCCATGGATGGGAGATTTCGGTCTCAGAACCTGCTTCTACACCGAATTCAACAACAGCGGCCCTGGTTCGGACAAATCGCAGAGAGTGAAGTGGCGGGGAATCAAGACGATCAATGCAGCACATGCAGTAAAATTCACTGCCGGGAGCTTCTTCAAAGGCGATAGCTGGATCAAGGCGAGTGGAGTGCCTTACAATGCCGGTATGTTTACCTCTGCTTAA 1722 48.37 MAYGNDSKKRKRYAMVGVSGLLLVAMVVAVTVGVNSNGSSDNSTTSSDTTELSASMKSIQSICQPTTYKQECVESLKSSNSSDPKELIQVGFKAAMKYVNEAAKKSVTLQEIEKDPRAAKALAGCKELMDFAIGELKHSFNKLGEFDITKIDEMLIDLRIWLSATITYQETCLDGFQNTTSNAGEKMKSALKTSMRLTSNGLAMVTEMSSLLTDLQIPGISRRLLSDDLPVLGHDEFPVWFNPGLRRLLQAPASSVKADIVIAKDGSGTYKTINEALTDIPKYSNTTFVIYIKEGVYDETVHFNKTMTHLLVIGDGPTKTRITGSKNFIDGTPTFKTATVAVLGDYFTAKDIGFENTAGAEKHQAVALRVQSDFSVFYNCAMDGYQDTLYAHAKRQFYRDCEVSGTIDFVFGDAAAVFQNCTFLVRKPLENQQTIVTAQGRKDRRQPSALVLQKCKITSAPEYFPVRKQFRAFLGRPWKEYSRTIIMESFIDDLIQPEGWLPWMGDFGLRTCFYTEFNNSGPGSDKSQRVKWRGIKTINAAHAVKFTAGSFFKGDSWIKASGVPYNAGMFTSA 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23953354 23955160 - Bda029811.1 Bda08g01087 11943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g01087 573 Gene3D Invertase/pectin methylesterase inhibitor family protein 53 209 IPR035513 -
Bda08g01087 573 CDD PMEI-like_3 61 210 - -
Bda08g01087 573 Pfam Plant invertase/pectin methylesterase inhibitor 58 204 IPR006501 GO:0004857
Bda08g01087 573 SMART PMEI_2 54 204 IPR006501 GO:0004857
Bda08g01087 573 SUPERFAMILY Pectin lyase-like 255 567 IPR011050 -
Bda08g01087 573 PANTHER PECTINESTERASE 15 569 - -
Bda08g01087 573 Pfam Pectinesterase 259 555 IPR000070 GO:0030599|GO:0042545
Bda08g01087 573 PANTHER PECTINESTERASE 15 569 - -
Bda08g01087 573 TIGRFAM PME_inhib: pectinesterase inhibitor domain 47 207 IPR006501 GO:0004857
Bda08g01087 573 Gene3D - 253 569 IPR012334 -
Bda08g01087 573 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 58 209 IPR035513 -
Bda08g01087 573 ProSitePatterns Pectinesterase signature 2. 403 412 IPR033131 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda08g01087 Bda12g00428 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g01087 Bda-Chr8:23953354 Bda12g00427 Bda-Chr12:5239006 0 dispersed
Bda08g01087 Bda-Chr8:23953354 Bda05g00625 Bda-Chr5:54329566 2.27E-154 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g01087 K01051 - csv:101207393 779.63