Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g01094 ATGGTTCTTATGCTCCGCTTAGTACGGAGGATCCGGGTTATTCAAGCTTGGGTGGATGTTTCTGAAGACATATCAACAAATGTTCAGCGTGCACGTGTAAAAATGGCTGAGTTATCCACGGCACATGCAAAGGCTTTAATGCCTTCATTTGGAGATGGTAAAGAAGATCAAAGATTAATTGAAGCTCTTACTCAAGAGATTACAGGTCTGATTAAGAAATCTGAGAAGAAACTTCAAAGACTTTCTGCAGTAGGACCTTCTGAAGATTCCAATGTCAGAAAAAATGTCCAGCGTTCTCTTGCCACAGACCTTCAAAATCTTTCAATGGAGCTTCGGAAAAAACAATCAAGTTACCTCAATAGGCTTAGGCAGCAAAAGGAGGGTCAAGATGGGATTGACTTGGAGATGAATCTGAATGGAAGTAGATCTACTACGGAGGATGATGAGTTGGATAACATGGTATTTAGCGAGCATAAGATGGCCCAGCTTAAAAAGAGTGAAGCATTCACAGTAGAAAGAGAAAGAGAAATCCAACAGGTTGTAGAATCTGTAAATGAGCTTGCCCAAATTATGAAGGATCTTTCAGTTCTTGTTATAGACCAGGGCACTATTGTTGATAGGATTGACTATAACATTCAAAATGTTGCAACTACAGTCGACGAAGGCCTTAAACAGCTGCAGAAGGCTGAAAGAACACAGAAACAAGGAGGGATGGTAATGTGCGCATCGGTGCTTCTTATCATGTGCTTCATCATGTTGGTTCTCCTGGTCCTCAAGGAAATATTTTTGTAA 792 40.66 MVLMLRLVRRIRVIQAWVDVSEDISTNVQRARVKMAELSTAHAKALMPSFGDGKEDQRLIEALTQEITGLIKKSEKKLQRLSAVGPSEDSNVRKNVQRSLATDLQNLSMELRKKQSSYLNRLRQQKEGQDGIDLEMNLNGSRSTTEDDELDNMVFSEHKMAQLKKSEAFTVEREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQLQKAERTQKQGGMVMCASVLLIMCFIMLVLLVLKEIFL 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24288912 24291573 + Bda029824.1 Bda08g01094 11950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g01094 263 ProSitePatterns Syntaxin / epimorphin family signature. 173 212 IPR006012 GO:0005484|GO:0006886|GO:0016020
Bda08g01094 263 SUPERFAMILY t-snare proteins 14 222 IPR010989 GO:0016020|GO:0016192
Bda08g01094 263 Gene3D - 11 221 - -
Bda08g01094 263 CDD SNARE_syntaxin16 172 228 - -
Bda08g01094 263 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 167 229 IPR000727 -
Bda08g01094 263 PANTHER TARGET SNARE COILED-COIL-LIKE DOMAIN-CONTAINING PROTEIN-RELATED 12 258 - -
Bda08g01094 263 SMART tSNARE_6 162 229 IPR000727 -
Bda08g01094 263 Pfam SNARE domain 203 255 IPR000727 -
Bda08g01094 263 PANTHER SYNTAXIN 12 258 IPR045242 -
Bda08g01094 263 SMART SynN_4 9 123 IPR006011 GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01638 Bda-Chr1:52304232 Bda08g01094 Bda-Chr8:24288912 1.40E-165 dispersed
Bda08g01094 Bda-Chr8:24288912 Bda13g01915 Bda-Chr13:43552402 1.41E-06 dispersed
Bda01g01644 Bda-Chr1:52440821 Bda08g01094 Bda-Chr8:24288912 1.40E-165 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g01094 K08489 - jre:109011309 426.402