Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda08g01102 | ATGGAGTATCGCAGCTATAACAATAGTCAGGAGACAAGCGGTCATGGTGAACACCATCATGAAGAGAACTCCCTTCTTGAAGATTTGTCTGAGGATTATCGCTTGCCGATCAGCCACAAGCCGACCGAAAATGTTGATTTGGATCAAGTGGAGCAGGCATCATTGGATAAGCAATTGACTTCCTCCAACATTGGGTTTCGACTTCTACAGAAAATGGGCTGGAAAGGAAAAGGCCTTGGAAAAGATGAGCAAGGAATAATTGAGCCAATAAAATCTGGGATTAGAGATCCAAAACTAGGAGTTGGGAAACAAGAAGAGGATGATTTTTTTACTGCAGAAGAAAATATAAGACGTAAAAAACTTGATGTTGAGCTTGAAGAGACCGAGGAACATGCAAAGAAGCGGGAGGTCTTGGCGGAACGTGAGCAGAAAATTCAGACAGAGGTAAAAGAAATACACAAAGTGTTTTATTGTGATCTATGCAACAAGCAGTATAAAATGGCTGTGGAATTCGAAGCTCACTTGAGTTCATACGATCACAATCACAGAAAGCGCTTTAAAGACATGAAAGAAATGCATGGTACAAGCAGTCGGGATGATAGGCAAAAACGTGAGCAGCAACGTCAAGAGAAAGAGATGGCTAAGTTTGCTCAAATATGCTCGTAA | 666 | 41.44 | MEYRSYNNSQETSGHGEHHHEENSLLEDLSEDYRLPISHKPTENVDLDQVEQASLDKQLTSSNIGFRLLQKMGWKGKGLGKDEQGIIEPIKSGIRDPKLGVGKQEEDDFFTAEENIRRKKLDVELEETEEHAKKREVLAEREQKIQTEVKEIHKVFYCDLCNKQYKMAVEFEAHLSSYDHNHRKRFKDMKEMHGTSSRDDRQKREQQRQEKEMAKFAQICS | 221 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 24712448 | 24714446 | - | Bda029836.2 | Bda08g01102 | 11958 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda08g01102 | 221 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
Bda08g01102 | 221 | SUPERFAMILY | beta-beta-alpha zinc fingers | 142 | 183 | IPR036236 | - | |
Bda08g01102 | 221 | ProSiteProfiles | G-patch domain profile. | 61 | 106 | IPR000467 | GO:0003676 | |
Bda08g01102 | 221 | MobiDBLite | consensus disorder prediction | 190 | 221 | - | - | |
Bda08g01102 | 221 | Pfam | G-patch domain | 62 | 102 | IPR000467 | GO:0003676 | |
Bda08g01102 | 221 | MobiDBLite | consensus disorder prediction | 13 | 35 | - | - | |
Bda08g01102 | 221 | MobiDBLite | consensus disorder prediction | 190 | 212 | - | - | |
Bda08g01102 | 221 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 158 | 180 | IPR013087 | - | |
Bda08g01102 | 221 | PANTHER | FINGER DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G04180)-RELATED | 1 | 219 | - | - | |
Bda08g01102 | 221 | Pfam | Zinc-finger double-stranded RNA-binding | 156 | 183 | IPR022755 | - | |
Bda08g01102 | 221 | SMART | G-patch_5 | 59 | 104 | IPR000467 | GO:0003676 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda08g01102 | Bda-Chr8:24712448 | Bda12g00284 | Bda-Chr12:3073900 | 1.96E-10 | dispersed | |
Bda11g00682 | Bda-Chr11:6848983 | Bda08g01102 | Bda-Chr8:24712448 | 6.76E-07 | transposed | |
Bda14g00473 | Bda-Chr14:3402744 | Bda08g01102 | Bda-Chr8:24712448 | 2.42E-07 | transposed | |
Bda03g01329 | Bda-Chr3:47450167 | Bda08g01102 | Bda-Chr8:24712448 | 3.24E-07 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda08g01102 | - | - | gmx:100785068 | 351.673 |