Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g01102 ATGGAGTATCGCAGCTATAACAATAGTCAGGAGACAAGCGGTCATGGTGAACACCATCATGAAGAGAACTCCCTTCTTGAAGATTTGTCTGAGGATTATCGCTTGCCGATCAGCCACAAGCCGACCGAAAATGTTGATTTGGATCAAGTGGAGCAGGCATCATTGGATAAGCAATTGACTTCCTCCAACATTGGGTTTCGACTTCTACAGAAAATGGGCTGGAAAGGAAAAGGCCTTGGAAAAGATGAGCAAGGAATAATTGAGCCAATAAAATCTGGGATTAGAGATCCAAAACTAGGAGTTGGGAAACAAGAAGAGGATGATTTTTTTACTGCAGAAGAAAATATAAGACGTAAAAAACTTGATGTTGAGCTTGAAGAGACCGAGGAACATGCAAAGAAGCGGGAGGTCTTGGCGGAACGTGAGCAGAAAATTCAGACAGAGGTAAAAGAAATACACAAAGTGTTTTATTGTGATCTATGCAACAAGCAGTATAAAATGGCTGTGGAATTCGAAGCTCACTTGAGTTCATACGATCACAATCACAGAAAGCGCTTTAAAGACATGAAAGAAATGCATGGTACAAGCAGTCGGGATGATAGGCAAAAACGTGAGCAGCAACGTCAAGAGAAAGAGATGGCTAAGTTTGCTCAAATATGCTCGTAA 666 41.44 MEYRSYNNSQETSGHGEHHHEENSLLEDLSEDYRLPISHKPTENVDLDQVEQASLDKQLTSSNIGFRLLQKMGWKGKGLGKDEQGIIEPIKSGIRDPKLGVGKQEEDDFFTAEENIRRKKLDVELEETEEHAKKREVLAEREQKIQTEVKEIHKVFYCDLCNKQYKMAVEFEAHLSSYDHNHRKRFKDMKEMHGTSSRDDRQKREQQRQEKEMAKFAQICS 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24712448 24714446 - Bda029836.2 Bda08g01102 11958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g01102 221 MobiDBLite consensus disorder prediction 1 35 - -
Bda08g01102 221 SUPERFAMILY beta-beta-alpha zinc fingers 142 183 IPR036236 -
Bda08g01102 221 ProSiteProfiles G-patch domain profile. 61 106 IPR000467 GO:0003676
Bda08g01102 221 MobiDBLite consensus disorder prediction 190 221 - -
Bda08g01102 221 Pfam G-patch domain 62 102 IPR000467 GO:0003676
Bda08g01102 221 MobiDBLite consensus disorder prediction 13 35 - -
Bda08g01102 221 MobiDBLite consensus disorder prediction 190 212 - -
Bda08g01102 221 ProSitePatterns Zinc finger C2H2 type domain signature. 158 180 IPR013087 -
Bda08g01102 221 PANTHER FINGER DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G04180)-RELATED 1 219 - -
Bda08g01102 221 Pfam Zinc-finger double-stranded RNA-binding 156 183 IPR022755 -
Bda08g01102 221 SMART G-patch_5 59 104 IPR000467 GO:0003676
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g01102 Bda-Chr8:24712448 Bda12g00284 Bda-Chr12:3073900 1.96E-10 dispersed
Bda11g00682 Bda-Chr11:6848983 Bda08g01102 Bda-Chr8:24712448 6.76E-07 transposed
Bda14g00473 Bda-Chr14:3402744 Bda08g01102 Bda-Chr8:24712448 2.42E-07 transposed
Bda03g01329 Bda-Chr3:47450167 Bda08g01102 Bda-Chr8:24712448 3.24E-07 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g01102 - - gmx:100785068 351.673