Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda08g01106 | ATGAGTAGAAAGAAGGTGAAGCTTTCGTACATATCAAATGATTCAGCAAGAAAAGCAACGTTTAAGAAAAGGAAGAAGGGACTGATGAAGAAGGTCAGCGAACTAACGACCCTTTGTGGGATCGATGCTTGCGCCATCATTTACAGCCCCTACGACTCTCAGCCTGAGGTGTGGCCTTCTACAGCAGGAGTTCAGCGCGTGGTGGGGCAGTTCAAGAAAATGCCAGAGATGGAGCAGAGCAAGAAGATGGTGAACCAGGAGAGCTTCCTTCGCCAGCGGATTGCCAAAGCGCAAGAGGGGTTGAAGAAGCAAAGGAAGGAGAACCGAGAGGAAGAAATGCGACGATTAATGTTCGACTGCCTCACCGGAGCAAAGGACCTACACAGCATGAGCATGGTGGAGCTGAACGAGACGGGGTGGTTGGTTGATAGCACACTCAAGGATGTAAACAAGAGGATTAAGTCGCTCCAGAAAGAGGCCGCCTGTCGTACTAACGTCGCCCACCCAGTCAATCCAGCTGTGGGCGGAAACGGAGCGGCAACAGAAGATGGTTTCGGGGGGAGAGGATGGGAGAAGGAGGAGCCATGGTTCATGGATATGTGCTTTGGTGAGGACGACATGATTCTGCCTCTAGCAGATCCTAATCACAACTCTCTCTATCTTTGGTCCAACGCCTTCTTTTCCTAA | 687 | 50.8 | MSRKKVKLSYISNDSARKATFKKRKKGLMKKVSELTTLCGIDACAIIYSPYDSQPEVWPSTAGVQRVVGQFKKMPEMEQSKKMVNQESFLRQRIAKAQEGLKKQRKENREEEMRRLMFDCLTGAKDLHSMSMVELNETGWLVDSTLKDVNKRIKSLQKEAACRTNVAHPVNPAVGGNGAATEDGFGGRGWEKEEPWFMDMCFGEDDMILPLADPNHNSLYLWSNAFFS | 228 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 25093608 | 25094294 | - | Bda029846.1 | Bda08g01106 | 11962 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda08g01106 | 228 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 51 | IPR002100 | GO:0003677|GO:0046983 | |
Bda08g01106 | 228 | ProSiteProfiles | MADS-box domain profile. | 1 | 49 | IPR002100 | GO:0003677|GO:0046983 | |
Bda08g01106 | 228 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 165 | - | - | |
Bda08g01106 | 228 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Bda08g01106 | 228 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Bda08g01106 | 228 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Bda08g01106 | 228 | CDD | MADS_SRF_like | 3 | 85 | IPR033897 | GO:0000981|GO:0000987|GO:0045944 | |
Bda08g01106 | 228 | Gene3D | - | 13 | 97 | IPR036879 | GO:0003677|GO:0046983 | |
Bda08g01106 | 228 | SUPERFAMILY | SRF-like | 3 | 95 | IPR036879 | GO:0003677|GO:0046983 | |
Bda08g01106 | 228 | Coils | Coil | 94 | 114 | - | - | |
Bda08g01106 | 228 | PANTHER | AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 | 1 | 165 | - | - | |
Bda08g01106 | 228 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda01g00428 | Bda-Chr1:31054282 | Bda08g01106 | Bda-Chr8:25093608 | 6.99E-33 | dispersed | |
Bda08g01106 | Bda-Chr8:25093608 | Bda10g00822 | Bda-Chr10:42625821 | 1.36E-138 | dispersed | |
Bda08g01106 | Bda-Chr8:25093608 | Bda13g01546 | Bda-Chr13:38692167 | 7.77E-76 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
16314 | PF00319 | SRF-TF | 1.50E-18 | No_clan | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda08g01106 | - | - | vvi:100254549 | 275.018 |