Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g01106 ATGAGTAGAAAGAAGGTGAAGCTTTCGTACATATCAAATGATTCAGCAAGAAAAGCAACGTTTAAGAAAAGGAAGAAGGGACTGATGAAGAAGGTCAGCGAACTAACGACCCTTTGTGGGATCGATGCTTGCGCCATCATTTACAGCCCCTACGACTCTCAGCCTGAGGTGTGGCCTTCTACAGCAGGAGTTCAGCGCGTGGTGGGGCAGTTCAAGAAAATGCCAGAGATGGAGCAGAGCAAGAAGATGGTGAACCAGGAGAGCTTCCTTCGCCAGCGGATTGCCAAAGCGCAAGAGGGGTTGAAGAAGCAAAGGAAGGAGAACCGAGAGGAAGAAATGCGACGATTAATGTTCGACTGCCTCACCGGAGCAAAGGACCTACACAGCATGAGCATGGTGGAGCTGAACGAGACGGGGTGGTTGGTTGATAGCACACTCAAGGATGTAAACAAGAGGATTAAGTCGCTCCAGAAAGAGGCCGCCTGTCGTACTAACGTCGCCCACCCAGTCAATCCAGCTGTGGGCGGAAACGGAGCGGCAACAGAAGATGGTTTCGGGGGGAGAGGATGGGAGAAGGAGGAGCCATGGTTCATGGATATGTGCTTTGGTGAGGACGACATGATTCTGCCTCTAGCAGATCCTAATCACAACTCTCTCTATCTTTGGTCCAACGCCTTCTTTTCCTAA 687 50.8 MSRKKVKLSYISNDSARKATFKKRKKGLMKKVSELTTLCGIDACAIIYSPYDSQPEVWPSTAGVQRVVGQFKKMPEMEQSKKMVNQESFLRQRIAKAQEGLKKQRKENREEEMRRLMFDCLTGAKDLHSMSMVELNETGWLVDSTLKDVNKRIKSLQKEAACRTNVAHPVNPAVGGNGAATEDGFGGRGWEKEEPWFMDMCFGEDDMILPLADPNHNSLYLWSNAFFS 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25093608 25094294 - Bda029846.1 Bda08g01106 11962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g01106 228 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Bda08g01106 228 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Bda08g01106 228 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 165 - -
Bda08g01106 228 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bda08g01106 228 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bda08g01106 228 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bda08g01106 228 CDD MADS_SRF_like 3 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Bda08g01106 228 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Bda08g01106 228 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Bda08g01106 228 Coils Coil 94 114 - -
Bda08g01106 228 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 165 - -
Bda08g01106 228 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00428 Bda-Chr1:31054282 Bda08g01106 Bda-Chr8:25093608 6.99E-33 dispersed
Bda08g01106 Bda-Chr8:25093608 Bda10g00822 Bda-Chr10:42625821 1.36E-138 dispersed
Bda08g01106 Bda-Chr8:25093608 Bda13g01546 Bda-Chr13:38692167 7.77E-76 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16314 PF00319 SRF-TF 1.50E-18 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g01106 - - vvi:100254549 275.018