Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g01106 ATGAGTAGAAAGAAGGTGAAGCTTTCGTACATATCAAATGATTCAGCAAGAAAAGCAACGTTTAAGAAAAGGAAGAAGGGACTGATGAAGAAGGTCAGCGAACTAACGACCCTTTGTGGGATCGATGCTTGCGCCATCATTTACAGCCCCTACGACTCTCAGCCTGAGGTGTGGCCTTCTACAGCAGGAGTTCAGCGCGTGGTGGGGCAGTTCAAGAAAATGCCAGAGATGGAGCAGAGCAAGAAGATGGTGAACCAGGAGAGCTTCCTTCGCCAGCGGATTGCCAAAGCGCAAGAGGGGTTGAAGAAGCAAAGGAAGGAGAACCGAGAGGAAGAAATGCGACGATTAATGTTCGACTGCCTCACCGGAGCAAAGGACCTACACAGCATGAGCATGGTGGAGCTGAACGAGACGGGGTGGTTGGTTGATAGCACACTCAAGGATGTAAACAAGAGGATTAAGTCGCTCCAGAAAGAGGCCGCCTGTCGTACTAACGTCGCCCACCCAGTCAATCCAGCTGTGGGCGGAAACGGAGCGGCAACAGAAGATGGTTTCGGGGGGAGAGGATGGGAGAAGGAGGAGCCATGGTTCATGGATATGTGCTTTGGTGAGGACGACATGATTCTGCCTCTAGCAGATCCTAATCACAACTCTCTCTATCTTTGGTCCAACGCCTTCTTTTCCTAA 687 50.8 MSRKKVKLSYISNDSARKATFKKRKKGLMKKVSELTTLCGIDACAIIYSPYDSQPEVWPSTAGVQRVVGQFKKMPEMEQSKKMVNQESFLRQRIAKAQEGLKKQRKENREEEMRRLMFDCLTGAKDLHSMSMVELNETGWLVDSTLKDVNKRIKSLQKEAACRTNVAHPVNPAVGGNGAATEDGFGGRGWEKEEPWFMDMCFGEDDMILPLADPNHNSLYLWSNAFFS 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25093608 25094294 - Bda029846.1 Bda08g01106 11962

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g01106 228 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Bda08g01106 228 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Bda08g01106 228 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 165 - -
Bda08g01106 228 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bda08g01106 228 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bda08g01106 228 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bda08g01106 228 CDD MADS_SRF_like 3 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Bda08g01106 228 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Bda08g01106 228 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Bda08g01106 228 Coils Coil 94 114 - -
Bda08g01106 228 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 165 - -
Bda08g01106 228 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g01106 - - - vvi:100254549 275.018
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00428 Bda-Chr1:31054282 Bda08g01106 Bda-Chr8:25093608 6.99E-33 dispersed
Bda08g01106 Bda-Chr8:25093608 Bda10g00822 Bda-Chr10:42625821 1.36E-138 dispersed
Bda08g01106 Bda-Chr8:25093608 Bda13g01546 Bda-Chr13:38692167 7.77E-76 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda10g01066 . 4 352 Type I MADS-box Gene Family AT2G03060 51.4 1.1e-95 347.1
Bda07g01472 . 1 351 Type I MADS-box Gene Family AT2G03060 50.4 3.5e-89 325.5
Bda15g00471 . 1 178 Type I MADS-box Gene Family AT5G60440 55.4 1.9e-45 179.9
Bda10g00822 . 3 171 Type I MADS-box Gene Family AT5G48670 60.8 4.8e-55 211.8
Bda08g01106 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 1.1e-54 210.7
Bda01g01380 . 1 169 Type I MADS-box Gene Family AT5G48670 59.5 5.5e-51 198.4
Bda13g01554 . 1 174 Type I MADS-box Gene Family AT5G48670 58.5 1.2e-50 197.2
Bda13g01546 . 1 174 Type I MADS-box Gene Family AT5G48670 57.4 2.7e-50 196.1
Bda10g01066 . 4 352 Type I MADS-box Gene Family AT2G03060 51.4 1.1e-95 347.1
Bda07g01472 . 1 351 Type I MADS-box Gene Family AT2G03060 50.4 3.5e-89 325.5
Bda15g00471 . 1 178 Type I MADS-box Gene Family AT5G60440 55.4 1.9e-45 179.9
Bda10g00822 . 3 171 Type I MADS-box Gene Family AT5G48670 60.8 4.8e-55 211.8
Bda08g01106 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 1.1e-54 210.7
Bda01g01380 . 1 169 Type I MADS-box Gene Family AT5G48670 59.5 5.5e-51 198.4
Bda13g01554 . 1 174 Type I MADS-box Gene Family AT5G48670 58.5 1.2e-50 197.2
Bda13g01546 . 1 174 Type I MADS-box Gene Family AT5G48670 57.4 2.7e-50 196.1
Bda10g01066 . 4 352 Type I MADS-box Gene Family AT2G03060 51.4 1.1e-95 347.1
Bda07g01472 . 1 351 Type I MADS-box Gene Family AT2G03060 50.4 3.5e-89 325.5
Bda15g00471 . 1 178 Type I MADS-box Gene Family AT5G60440 55.4 1.9e-45 179.9
Bda10g00822 . 3 171 Type I MADS-box Gene Family AT5G48670 60.8 4.8e-55 211.8
Bda08g01106 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 1.1e-54 210.7
Bda01g01380 . 1 169 Type I MADS-box Gene Family AT5G48670 59.5 5.5e-51 198.4
Bda13g01554 . 1 174 Type I MADS-box Gene Family AT5G48670 58.5 1.2e-50 197.2
Bda13g01546 . 1 174 Type I MADS-box Gene Family AT5G48670 57.4 2.7e-50 196.1
Bda10g01066 . 4 352 Type I MADS-box Gene Family AT2G03060 51.4 1.1e-95 347.1
Bda07g01472 . 1 351 Type I MADS-box Gene Family AT2G03060 50.4 3.5e-89 325.5
Bda15g00471 . 1 178 Type I MADS-box Gene Family AT5G60440 55.4 1.9e-45 179.9
Bda10g00822 . 3 171 Type I MADS-box Gene Family AT5G48670 60.8 4.8e-55 211.8
Bda08g01106 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 1.1e-54 210.7
Bda01g01380 . 1 169 Type I MADS-box Gene Family AT5G48670 59.5 5.5e-51 198.4
Bda13g01554 . 1 174 Type I MADS-box Gene Family AT5G48670 58.5 1.2e-50 197.2
Bda13g01546 . 1 174 Type I MADS-box Gene Family AT5G48670 57.4 2.7e-50 196.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001414 5 4 2 4 3 2 4 2 2 2 2 2 2 2 3 2 2 3 4 2 2 3 2 2 2 2 2 2 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16314 PF00319 SRF-TF 1.50E-18 No_clan Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g01106 Bda_Chr08 FPKM 0.559896 0.53623 0.0 0.0 0.0 0.0 0.0 1.068182 0.369249