Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g01169 ATGCTTCTTGTGCAACCAACGCTTTCCAATTACTTCCCAACGACTCAGTTTAGCTGTCCACTTCTTCTACGCCGTCACATCGTACAACTTCCCCTTCCGGTCGCTTCTGTCGCCATTGCCGCTGTTTCGACGACCTCCGGGGAACCTTGTTTCTCTTCATCCAAACCGCTAGAAGTCGACGAAAACGATTCTGTTGCTCTGCAGAAACGTCGTTACGACTTCACTCCTCTCCTCAACTTTCTCTCGAATTCACTATCCTCTCGCAGGACTTCTCCTGAGTTTTCTTTGAACTCGGACTTAGACTCGGACCTAGCATCTCCGACCTCGCTCAATTTAACAGAGTTCCAGCTTGCGGAATTGTATCGGGCCGTGCCGGCTCCACTCTGGCACTCTCTGCTGAAATCTCTCTGCTCCTCTTCTTCTATTGGACTAGCATATGCCGTCGTCACGTGGCTCCAAAAGCATAATCTCTGTTTCTCGTACGAATTGCTCTACTCGATTCTCATTCACGCACTTGGGCGTTCAGAAAAGCTCTACGAGGCGTTCTTGTTGTCCCAGAGACAAACCCTAACCCCATTAACGTACAATGCACTGATTGGTGCATGTGCACGTAACGATGACTTAGAAAAGGCAATCAATTTGATGTCTAGGATGCGCCAAGATGGTTTCCAGTCGGATTTCGTGAATTACAGTTTGATAATTCAATCCCTAACGCGTACGAACAAGATTGATTCTGCTGTTTTGCAAAAGCTTTATGACGAGATTGAGTCTGATATGATTGAACTAGACGGGCAGCTCCTTAATGACATAACTGTGGGTTTTGCAAAAGCTGGCGATCCAAGTCGAGCTATAAATTTCCTGGCCATGGTTCAAGCCAGTGGGTTGAGTCCCAAAACCGCGACGTTTGTTGCAATTATGTCTGCTTTGGGAAATACTGGTCGAACAGTGGAAGCAGAGGCTATTTTTGAGGAAATGAAAGAAGGAGGATTGAAACCGAGGACTAAGGCATACAATGCATTACTTAAAGGATATGTCAAAACTGGATCAGTGAGAGATGCTGAGTTAGTTGTGTCCGAGATGGAAAAGAGTGGAGTCTCTCCGGATGAGCACACTTACAGTCTTCTTATAGATGCTTATGCAAATGTTGGTAGGTGGGAAAGTGCAAGAATTGTATTAAAAGAAATGGAAGCTAGAAATGTACAACCTAATTCATTTGTTTTTAGTAGAATTTTAGCTTGCTACCGGGATAGAGGCGAGTGGCAAAAAACATTTCAGGTTTTAAGGGAAATGAAAAGTAGTGGGGTTAAACCGGATAGGCATTTCTACAATGTCATGATTGATACTTTTGGAAAGTTCAATTGTCTTGATCATGCAATGGAAACATTTGAGCAGATGTTATCAGAGGAAATTCAACCAGATACTGTCACATGGAACACCCTTGTTGACTGCCATTGTAAGGCGGGGCGCCATGATAAGGCAGCAGAATTGTTTGAGGAGATGCAGCAAAGTGGTTACTCTCCTTGTGCTACTACTTATAATATCATGATTAACTCTTTTGGAGAGCAGGAGAAGTGGGAAGAGGTGAAAAACTTGTTGGGAAAAATGCAGAGTCAGGGATTACTTCCAAATGTAATAACATATACAACTCTTGTTAATATATATGGACAGTCCGGGAGATTTAGTGATGCAATCGAGTGCTTGGAAGTTATGAAATCTGGCGGGTTGAAACCATCCTCTACCATGTACAATGCTCTAATAAATGCATATGCACAAAGGGGTCTATCCGAGGAAGCAGTAAATGCATTTCGTGTTATGAGAGCAGAGGGCTTAAAGCCCAGTCTTTTGGCTCTTAATTCATTAATTAATGCGTTTGGTGAGGACAGAAGAGATGCAGAAGCCTTTGCAGTTTTACAATATATGAAGGAGAATGGTGTGAAACCTGATGTGGTTACATACACTACACTAATGAAAGCTCTTATTCGGGTTGATAAATTTAACAAGGTACCATCTGTGTATGAAGAAATGATCTTGTCTGGGTGCAAGCCTGACAAAAAAGCTAGGGCGATGTTACGATCTGGACTGAGATACATGAAGAGCACCCTAAGAGAATAA 2112 43.13 MLLVQPTLSNYFPTTQFSCPLLLRRHIVQLPLPVASVAIAAVSTTSGEPCFSSSKPLEVDENDSVALQKRRYDFTPLLNFLSNSLSSRRTSPEFSLNSDLDSDLASPTSLNLTEFQLAELYRAVPAPLWHSLLKSLCSSSSIGLAYAVVTWLQKHNLCFSYELLYSILIHALGRSEKLYEAFLLSQRQTLTPLTYNALIGACARNDDLEKAINLMSRMRQDGFQSDFVNYSLIIQSLTRTNKIDSAVLQKLYDEIESDMIELDGQLLNDITVGFAKAGDPSRAINFLAMVQASGLSPKTATFVAIMSALGNTGRTVEAEAIFEEMKEGGLKPRTKAYNALLKGYVKTGSVRDAELVVSEMEKSGVSPDEHTYSLLIDAYANVGRWESARIVLKEMEARNVQPNSFVFSRILACYRDRGEWQKTFQVLREMKSSGVKPDRHFYNVMIDTFGKFNCLDHAMETFEQMLSEEIQPDTVTWNTLVDCHCKAGRHDKAAELFEEMQQSGYSPCATTYNIMINSFGEQEKWEEVKNLLGKMQSQGLLPNVITYTTLVNIYGQSGRFSDAIECLEVMKSGGLKPSSTMYNALINAYAQRGLSEEAVNAFRVMRAEGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKALIRVDKFNKVPSVYEEMILSGCKPDKKARAMLRSGLRYMKSTLRE 703
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 46723082 46726128 + Bda030114.1 Bda08g01169 12025

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g01169 703 Pfam Pentatricopeptide repeat domain 391 451 IPR002885 -
Bda08g01169 703 Pfam Pentatricopeptide repeat domain 531 591 IPR002885 -
Bda08g01169 703 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 367 IPR002885 -
Bda08g01169 703 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 368 402 IPR002885 -
Bda08g01169 703 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 107 702 - -
Bda08g01169 703 Gene3D Tetratricopeptide repeat domain 250 327 IPR011990 GO:0005515
Bda08g01169 703 Gene3D Tetratricopeptide repeat domain 398 465 IPR011990 GO:0005515
Bda08g01169 703 Gene3D Tetratricopeptide repeat domain 536 603 IPR011990 GO:0005515
Bda08g01169 703 Gene3D Tetratricopeptide repeat domain 604 681 IPR011990 GO:0005515
Bda08g01169 703 Gene3D Tetratricopeptide repeat domain 328 397 IPR011990 GO:0005515
Bda08g01169 703 Gene3D Tetratricopeptide repeat domain 466 535 IPR011990 GO:0005515
Bda08g01169 703 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN CRP1 HOMOLOG, CHLOROPLASTIC 107 702 - -
Bda08g01169 703 Pfam PPR repeat family 334 381 IPR002885 -
Bda08g01169 703 Pfam PPR repeat family 615 660 IPR002885 -
Bda08g01169 703 Pfam PPR repeat family 472 519 IPR002885 -
Bda08g01169 703 Gene3D Tetratricopeptide repeat domain 104 249 IPR011990 GO:0005515
Bda08g01169 703 Pfam PPR repeat 194 223 IPR002885 -
Bda08g01169 703 Pfam PPR repeat 301 329 IPR002885 -
Bda08g01169 703 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 613 647 IPR002885 -
Bda08g01169 703 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 191 225 IPR002885 -
Bda08g01169 703 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 298 332 IPR002885 -
Bda08g01169 703 SUPERFAMILY TPR-like 339 568 IPR011990 GO:0005515
Bda08g01169 703 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 403 437 IPR002885 -
Bda08g01169 703 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 473 507 IPR002885 -
Bda08g01169 703 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 438 472 IPR002885 -
Bda08g01169 703 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 648 682 IPR002885 -
Bda08g01169 703 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 543 577 IPR002885 -
Bda08g01169 703 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 578 612 IPR002885 -
Bda08g01169 703 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 508 542 IPR002885 -
Bda08g01169 703 TIGRFAM PPR: pentatricopeptide repeat domain 406 438 IPR002885 -
Bda08g01169 703 TIGRFAM PPR: pentatricopeptide repeat domain 545 578 IPR002885 -
Bda08g01169 703 TIGRFAM PPR: pentatricopeptide repeat domain 370 403 IPR002885 -
Bda08g01169 703 TIGRFAM PPR: pentatricopeptide repeat domain 301 332 IPR002885 -
Bda08g01169 703 TIGRFAM PPR: pentatricopeptide repeat domain 336 369 IPR002885 -
Bda08g01169 703 TIGRFAM PPR: pentatricopeptide repeat domain 442 474 IPR002885 -
Bda08g01169 703 TIGRFAM PPR: pentatricopeptide repeat domain 194 226 IPR002885 -
Bda08g01169 703 TIGRFAM PPR: pentatricopeptide repeat domain 581 613 IPR002885 -
Bda08g01169 703 TIGRFAM PPR: pentatricopeptide repeat domain 475 507 IPR002885 -
Bda08g01169 703 TIGRFAM PPR: pentatricopeptide repeat domain 511 544 IPR002885 -
Bda08g01169 703 TIGRFAM PPR: pentatricopeptide repeat domain 618 649 IPR002885 -
Bda08g01169 703 TIGRFAM PPR: pentatricopeptide repeat domain 650 683 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g01169 - - - zju:107419847 1069.3
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g01169 Bda-Chr8:46723082 Bda10g00563 Bda-Chr10:39624188 6.89E-21 dispersed
Bda10g00007 Bda-Chr10:169108 Bda08g01169 Bda-Chr8:46723082 6.44E-07 dispersed
Bda01g00619 Bda-Chr1:33195488 Bda08g01169 Bda-Chr8:46723082 6.36E-24 transposed
Bda01g01072 Bda-Chr1:45238098 Bda08g01169 Bda-Chr8:46723082 3.84E-06 transposed
Bda03g00833 Bda-Chr3:7138913 Bda08g01169 Bda-Chr8:46723082 3.20E-18 transposed
Bda05g00740 Bda-Chr5:55754331 Bda08g01169 Bda-Chr8:46723082 4.12E-17 transposed
Bda07g00202 Bda-Chr7:2421728 Bda08g01169 Bda-Chr8:46723082 1.12E-34 transposed
Bda11g00114 Bda-Chr11:1547007 Bda08g01169 Bda-Chr8:46723082 5.86E-12 transposed
Bda11g00963 Bda-Chr11:9394554 Bda08g01169 Bda-Chr8:46723082 7.13E-09 transposed
Bda11g01240 Bda-Chr11:12927527 Bda08g01169 Bda-Chr8:46723082 2.81E-25 transposed
Bda04g00297 Bda-Chr4:46132914 Bda08g01169 Bda-Chr8:46723082 3.53E-13 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g103 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone20ag0029 . . . . . . Bda08g01169 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009283 1 3 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g01169 Bda_Chr08 FPKM 10.134744 9.161668 12.621189 13.702972 6.815115 6.833491 7.103132 14.452764 14.817765