Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g01170 ATGGGTCGTCTTCTTCTTTCTCTTCCTCCTCCCTTGTGGATTACCCTTTGTTTATTTGCTGCTCTTCGAGGTCTCTTCGCCGCCGGCGCCAAACCCAATCATACCCCCCATTTATTCACTCCTATTAATCGCGATCTTTACCATTCCAGCGTGGATTTGATGAAACAGATACAGGCTTTGGTTCATCGTCATCCAGATAAACTCACTATGGAGACAATTAAATCTGCAAATAAAGGCTACCAAGCAAAGATTTCAGTAGTTACTTATGGACAAAAGAGGATAGAGAGTACCGACACTTCAAAGTTTCGGATACTTTTAAGTTTTGGGCAGCATGGAAGGGAGCTCATAACAACTGAACTTGCTTTAAGGATCCTGTCAGTTTTGAGTGAAGAACAGTTTTTACCCACCATGGATCCAACTTCCTTAAATAACACCCTTTACAATCTTGTTATAAAGGTGGTGCCAATGGAAAATCCAAATGGTCGGAAGCTTGTCGAAGAAGGAGATCTTTGTGAGAGGAGAAATGGTCCAGGGGTTGATCTCAACAGGAATTGGGGTGTAGATTGGGGTAAAAAGGAAAAGGACTATGACCCTTACGAAGAAAATCCAGGACAAGCTCCTTTTAGCGAGCCCGAGACTCAAATGATGCGGAAACTCGCCATATCATTTGATCCACACATATGGATCAACGTCCACTCTGGAATGGAGGCTATGTTCATGCCATATGACCATAAAAACACAACTCCCGGTGGGCTATCTTCACAGCGAATGAGAAAATTGCTTGAAGAACTGAACAAACAGCATTGCCAAAGACGCTGCATGATCGGATCTGGAGGAGGTTCTGTTGGGTATCTGGCTCATGGGACAGCTACAGATTTCATGTATGACATTGTAAAAGTGCCTATGGCTTTCACATTTGAGATATATGGCGATGCAGCTGCCTCATCAAAAGACTGTTTCAAAATCTTCAATCCCACAGATCTCAATATCTTCAATAAAGTTGTGAGTGATTGGTCCGCTGCATTTTTCACGATCTTCAAATTGGGTCCACGGCTGCTCGGTGAGGTCAAAGCGAAGGATCCTATGTCAAACTCGGACAAATGGGTATCAATAGATGAGTATTTGGAAGGGTATTTGATGGAGAGGAGTAGTAGATATGGAAAGAAGATAGAGGTGCTTGAACTAGGAATGCAGGAGATTAGGACCTATTTTAGGTTGTTTTTGTTGTCCTCTGTTCTGTTATTGTTCATGTTCTGTTCCAGAATTTCAAAAAGCAAGTTTAGCAGACCCATTGTTACTGCCCTTCCTTTTTGA 1314 42.54 MGRLLLSLPPPLWITLCLFAALRGLFAAGAKPNHTPHLFTPINRDLYHSSVDLMKQIQALVHRHPDKLTMETIKSANKGYQAKISVVTYGQKRIESTDTSKFRILLSFGQHGRELITTELALRILSVLSEEQFLPTMDPTSLNNTLYNLVIKVVPMENPNGRKLVEEGDLCERRNGPGVDLNRNWGVDWGKKEKDYDPYEENPGQAPFSEPETQMMRKLAISFDPHIWINVHSGMEAMFMPYDHKNTTPGGLSSQRMRKLLEELNKQHCQRRCMIGSGGGSVGYLAHGTATDFMYDIVKVPMAFTFEIYGDAAASSKDCFKIFNPTDLNIFNKVVSDWSAAFFTIFKLGPRLLGEVKAKDPMSNSDKWVSIDEYLEGYLMERSSRYGKKIEVLELGMQEIRTYFRLFLLSSVLLLFMFCSRISKSKFSRPIVTALPF 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 46726788 46729750 - Bda030115.1 Bda08g01170 12026

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g01170 437 PANTHER OS02G0119300 PROTEIN 25 432 - -
Bda08g01170 437 SUPERFAMILY Zn-dependent exopeptidases 44 347 - -
Bda08g01170 437 CDD M14-CPA-like 101 326 IPR034269 -
Bda08g01170 437 Gene3D Zn peptidases 45 333 - -
Bda08g01170 437 PANTHER PROTEASE FAMILY M14 CARBOXYPEPTIDASE A,B 25 432 - -
Bda08g01170 437 SMART zn_carb 47 318 IPR000834 GO:0004181|GO:0006508|GO:0008270
Bda08g01170 437 Pfam Zinc carboxypeptidase 56 313 IPR000834 GO:0004181|GO:0006508|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g01170 - - - jre:109020301 664.07
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g104 . . . . . . . . Cmo05g01003 . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1448 . . . . . . . Bda08g01170 . . . . . . . . . Cma05g00985 Car05g00865 . . . . . . . . . . . . . . . . . Lsi08g00546 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008631 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 3 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g01170 Bda_Chr08 FPKM 1.311795 1.190191 0.280385 0.446345 0.0 0.084996 0.0 0.0 0.053407