Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g01180 ATGCCTCGCGAGATTCGGATTCGGATCATCTGCACCTCTTTATGTCACAGCGACGTCACATTCTGGAAAATGAAGGTTCCTTATGTGTTTTCATGTGCTGTTCAATCTTTTAGGGTGGTGGAGAGTGTAGGAGATGATGTTAATGAGATTACGGTAGGGGATACTGTTATCCCAACCTTCTTGTCGGACTGTGGACAATGTGTAGATTGCACATCAAAGAAGAGCAATCTCTGTTCCAAACTTCCTTTTAAGGTCTCACCTTGGATGCATAGATATGAAACAAGTAGATTCACGGATCTCAATGGAGAGGTTTTGTATCATTTTATGTTTGTATCAAGTTTCAGCGAATATACAGTGGTGGATATAGCCCACGTGACAAAAATTGACCCTCAAATCCCTCCAAACAAGGCATGCCTCCTTAGTTGTGGGGTATCTACTGGGGTTGGTGCTGCATGGAAAACAGCTGATGTGGAGGCAGGATCGACAGTAGCCATATTTGGACTCGGGTCCATAGGCTTGGCTGTCGCTGAAGGAGCAAGATTATGCAAAGCAAGTAGAATTATTGGGGTAGATATCAACCCAGAAAAATATGAATTTGGAAAAACTTTTGGTGTCACGGACTTTGTTAATGTTGGACTTTGCAAGAATAAATCTGTCAGCCAGATGATAAATGAGATGACTGGTGGGGGAGCAGACTATTGTTTTGAATGTGTTGGATTGGCATCTTTGGTCCAGGAAGCCTATGCTTGCTGCAGAAAGGGGTGGGGAAAAACAATTGTGGTGGGAGTAGACCAGCCAGGTTCACTGTTGAGCCTGAGCTCAAATGACGTCCTTCATAATGGAAAAATCCTCATGGGCTCCTTATTTGGTGGACTGAAGCCTAAGTCAGATATTCCTATTCTTCTCAAATATTACTTAGACAAGGAACTACAACTTGATGAATTTGTGACACATGAACTAAGGTTTGAAGACATCAACGAAGCTTTTAATCTTCTGGTTGAAGGAAAATGCCTCCGCTGCGTAATTTGGATGGATAACCAAAGGTGA 1047 42.69 MPREIRIRIICTSLCHSDVTFWKMKVPYVFSCAVQSFRVVESVGDDVNEITVGDTVIPTFLSDCGQCVDCTSKKSNLCSKLPFKVSPWMHRYETSRFTDLNGEVLYHFMFVSSFSEYTVVDIAHVTKIDPQIPPNKACLLSCGVSTGVGAAWKTADVEAGSTVAIFGLGSIGLAVAEGARLCKASRIIGVDINPEKYEFGKTFGVTDFVNVGLCKNKSVSQMINEMTGGGADYCFECVGLASLVQEAYACCRKGWGKTIVVGVDQPGSLLSLSSNDVLHNGKILMGSLFGGLKPKSDIPILLKYYLDKELQLDEFVTHELRFEDINEAFNLLVEGKCLRCVIWMDNQR 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 47362611 47365643 - Bda030129.1 Bda08g01180 12036

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g01180 348 Pfam Alcohol dehydrogenase GroES-like domain 3 127 IPR013154 -
Bda08g01180 348 SUPERFAMILY GroES-like 2 158 IPR011032 -
Bda08g01180 348 Pfam Zinc-binding dehydrogenase 171 294 IPR013149 -
Bda08g01180 348 PANTHER ALCOHOL DEHYDROGENASE 1 343 - -
Bda08g01180 348 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 132 307 IPR036291 -
Bda08g01180 348 Gene3D - 2 339 - -
Bda08g01180 348 Gene3D - 147 287 - -
Bda08g01180 348 PANTHER ALCOHOL DEHYDROGENASE-LIKE 7 1 343 - -
Bda08g01180 348 SUPERFAMILY GroES-like 295 343 IPR011032 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g01180 K00121 frmA, ADH5, adhC; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] - qsu:112018306 582.793
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda08g01180 Bda13g01537 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00833 Bda-Chr6:11574984 Bda08g01180 Bda-Chr8:47362611 6.90E-108 dispersed
Bda08g01180 Bda-Chr8:47362611 Bda05g00876 Bda-Chr5:57199328 9.99E-95 dispersed
Bda03g01335 Bda-Chr3:47791870 Bda08g01180 Bda-Chr8:47362611 5.85E-64 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g134 . . . . . . . . Cmo05g01018 . . . . . . . . Bhi04g01547 Tan02g1550 . . Hepe08g1466 . . . . . . . . . . . . . . . . Cme03g01365 Blo17g00721 . Bda08g01180 . . . . . . . . . Cma05g00998 Car05g00880 . Cpe11g00807 . . . . . . . . . . . . . . . Lsi08g00814 . . .
Vvi18g1208 . . . . . . . . . . . . Car01g00888 . . . . . . . . . . . . . . . . . . . . Cone17ag0800 Cone20ag0404 . . . . Blo17g00721 Blo18g00224 Bda08g01180 Bda13g01537 Bpe02g01599 Bpe14g00328 . Bma05g00197 Sed07g2855 Cmo01g01036 . . . . . . Cpe02g00894 Bhi09g01486 Tan01g3358 Cmetu01g1438 . Hepe03g1217 Mch11g1415 . Cla09g00911 Cam09g0963 Cec09g0968 Cco09g0974 . . Cre09g0932 . . Chy03g00638 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000997 1 5 1 1 0 2 3 2 2 4 2 3 4 4 4 4 3 1 4 3 3 4 3 5 1 4 2 2 4 3 84
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g01180 Bda_Chr08 FPKM 3.492257 4.90663 10.479891 11.726566 17.127428 14.693784 16.525284 4.662745 5.23988