Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g01186 ATGTCTCGAAGCGATCTTCTTTGCCGGGCCCCCCTTCTCCAAACGCTGCCTGTTGCAAACTCGGAGGCTCTTATATCTGCTTTAGTTGCAGCTGTAAGCTCCTGCAGTTCCGTTTGTTATTGCCGTGGCATCCATGCCAGAGCTATGAAGTCTGTAAATTACAGAGATGGATTCATCGGGGATCAGTTGGCTTTTCGCTACGTGAAGTTGGGATACCCGGAAGATGCACAGAAGCTGTTCGACGAAATTCTTCACAGAGATGTGATTTCTTGGAATTCGTTGATTGCTGGTTTTTCTCGAAGTGGATATCTCGAAACATGTCTGAAAATAATCTGTTTGATGAAGTTTGAAACTATGATCAAACCAAATGATGTTACCATCATATCAGTTGTATCAGCTTGTACCAATACTAAATCTCTGGAAGCCGGGAAGTACGTTCATGGATTTTCTCTTAAATCCGGTTTAATCTTCTATGCTAAAGTCTCTAATTCTCTAATCAACATGTATGGGAGGTTGGACTGTTTTGATGAGGCCTGTAATCTGTTCTACGCCATGCCAGTTCCAAACATAGTATCGTGGAATTCAATCATTGCAGTTTCTACTAAATCCGGGTTGGCAGATAAGGGGTTAGCTTCCTTTAATCAGATGAGAAAGGATGGAATAGAACCTGATGAAGGAACTATGCTTGTTTTATTTCAAGTTTGTGAATCCTTAGGAATTCGAAAATTAGCCGAGGGTATCCATGGTTTAATATTCCGCTATGGTTTACATGACAAGGTAGAAATTGCGACTGCTCTTCTTGATATTTATGCAAAGTTAGGGAGATTAAATGCTTCGGAAAAGGTTTTTGGAGAAATAACATACCCGGATAGAGTAGCTCGGACTGCCATGCTTGCAGGCTATGCAGTTCATGGAATTGGAAAAGAAGCAATCGAGCTTTTTGAGAGCATGGTTCTGCAAGGCCTAAAGCCTGATCATGTTGTCTTCACGCATTTATTAAATGGTTGCAGTCACTCAGGGCTGGTAAAGGAGGGCAGACAATACTTCAAGCTCATGTCTGAATTTTATGGAATTGCGCCAAGGGTGGATCATTATGCATGCATGGTAGATCTACTAGGTCGACGAGGACTTCTCGAAGAAGCTTATGAGCTGATTAAAAGTATGCCAATGGATCCAAATTCCGCTGTATGGGGTGCCCTTCTCGGGGCTTGTAAGGTTCATAAAAATGTCGAGCTGGGTGAGAAAGTTGCCGAGTATTTGTTCGATATGGATCCTTCCGATGCACGAAACTACATTGTGCTGTCAAATATTTACTCGTCGTGTCACTTATGGAATGATGCTTCTAAAGTGAGAGCCTTGATGAAGAACCGAGGTGTTCTTAGAAACACGGGTTGCAGTTTTATCGAACATGAAAGCAAGATTTATCGTTTTGTAGTGGGCGATCAGTCTCATCCAGACTCGAATAAGATTTATACGAAGTTAGAAGAAGTGATGACAAAAATTCGAGGGGCTGGATTCGAGTTGAAAACTGAATTTATCCATCAAGATGTTGATGACGAAGTGAAGGAAGATATGATCAATAAGCACAGTGAGAAGCTGGCCATTGCCTTTGGGCTTTTAGTCGGTAATGTTAAGACGCCATTGGTGATAACAAAGAATCTCAGAATATGTGGAGACTGCCATAGCACTGCAAAGGGTATTTCACTGATTGAGAAGAGAACGATCATCATTAGAGATACTAAACGGTTTCACCATTTCTCCAATGGATTTTGTTCTTGTCGAGATTATTGGTAA 1794 41.58 MSRSDLLCRAPLLQTLPVANSEALISALVAAVSSCSSVCYCRGIHARAMKSVNYRDGFIGDQLAFRYVKLGYPEDAQKLFDEILHRDVISWNSLIAGFSRSGYLETCLKIICLMKFETMIKPNDVTIISVVSACTNTKSLEAGKYVHGFSLKSGLIFYAKVSNSLINMYGRLDCFDEACNLFYAMPVPNIVSWNSIIAVSTKSGLADKGLASFNQMRKDGIEPDEGTMLVLFQVCESLGIRKLAEGIHGLIFRYGLHDKVEIATALLDIYAKLGRLNASEKVFGEITYPDRVARTAMLAGYAVHGIGKEAIELFESMVLQGLKPDHVVFTHLLNGCSHSGLVKEGRQYFKLMSEFYGIAPRVDHYACMVDLLGRRGLLEEAYELIKSMPMDPNSAVWGALLGACKVHKNVELGEKVAEYLFDMDPSDARNYIVLSNIYSSCHLWNDASKVRALMKNRGVLRNTGCSFIEHESKIYRFVVGDQSHPDSNKIYTKLEEVMTKIRGAGFELKTEFIHQDVDDEVKEDMINKHSEKLAIAFGLLVGNVKTPLVITKNLRICGDCHSTAKGISLIEKRTIIIRDTKRFHHFSNGFCSCRDYW 597
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 47877335 47879128 - Bda030138.1 Bda08g01186 12042

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g01186 597 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 17 583 - -
Bda08g01186 597 Pfam E+ motif 474 501 IPR046849 -
Bda08g01186 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 189 223 IPR002885 -
Bda08g01186 597 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 17 583 - -
Bda08g01186 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 290 324 IPR002885 -
Bda08g01186 597 Pfam PPR repeat 365 389 IPR002885 -
Bda08g01186 597 Pfam PPR repeat 89 115 IPR002885 -
Bda08g01186 597 Pfam PPR repeat 264 286 IPR002885 -
Bda08g01186 597 Pfam PPR repeat 67 86 IPR002885 -
Bda08g01186 597 Pfam PPR repeat 163 185 IPR002885 -
Bda08g01186 597 Pfam E motif 407 469 IPR046848 -
Bda08g01186 597 Gene3D Tetratricopeptide repeat domain 261 489 IPR011990 GO:0005515
Bda08g01186 597 Gene3D Tetratricopeptide repeat domain 14 147 IPR011990 GO:0005515
Bda08g01186 597 Pfam DYW family of nucleic acid deaminases 505 597 IPR032867 GO:0008270
Bda08g01186 597 TIGRFAM PPR: pentatricopeptide repeat domain 89 115 IPR002885 -
Bda08g01186 597 TIGRFAM PPR: pentatricopeptide repeat domain 327 360 IPR002885 -
Bda08g01186 597 TIGRFAM PPR: pentatricopeptide repeat domain 191 225 IPR002885 -
Bda08g01186 597 TIGRFAM PPR: pentatricopeptide repeat domain 295 325 IPR002885 -
Bda08g01186 597 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 35 - -
Bda08g01186 597 Gene3D Tetratricopeptide repeat domain 148 248 IPR011990 GO:0005515
Bda08g01186 597 Pfam PPR repeat family 188 235 IPR002885 -
Bda08g01186 597 Pfam PPR repeat family 289 337 IPR002885 -
Bda08g01186 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 87 121 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g01186 - - - qsu:112017115 771.155
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g01186 Bda-Chr8:47877335 Bda15g00115 Bda-Chr15:3527971 6.95E-07 dispersed
Bda08g01186 Bda-Chr8:47877335 Bda03g01661 Bda-Chr3:55899609 7.02E-25 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g147 . . . . . . . . Cmo05g00332 . . . . . . . . Bhi04g00085 . . . . . . Cla08g01392 . . . . . . . . . Cone20ag0051 . . . Cme03g01544 . . Bda08g01186 . Bpe02g01681 Bpe05g00164 . . . . . . Cma05g00329 Car05g00276 . . . . . . . . . . . . . . . . . Lsi08g01284 . Chy03g01051 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012454 1 1 0 2 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 0 2 0 0 1 1 0 0 1 24
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g01186 Bda_Chr08 FPKM 2.064697 2.396622 2.840443 2.213847 4.79179 4.569489 6.385473 3.525616 3.398311