Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g01187 ATGGCGATGCCAGTGCGAGTGTACGGACCACCCATGTCCACCGCCGTCTCCAGAGTCTTAGCTTGTCTTCTTGAGAAAGATGTCAAGTTTGACATCATACCTGTTGACATGTCCAAAGGCGAGCACAAACAGCCCGACTACCTCAAGATTCAGCCTTTTGGTCAAGTACCAGCATTTAAAGACGAACGCATCTCTCTCTTCGAGTCGCGGTCAATATGCCGTTACGTCTGCGAGAAGTACTCAAATAACGGCAATAAGGGATTGTACGGATTGAACCAGATTGAAAAGGCTTCCATTGACCAGTGGCTAGAAGCTGACGGTCAGAGCTTCAACCCACCTAGCGCAGCTCTTGTATTTCAGCTTGCATTTGCTCCGAGAATGAAGCTGAAGCAAGACGAAAATGTGATCAAGCAGAATGAGGAGAAGCTATCCAAAGTGCTCGATGTGTACGATGAAAGGCTCGGGACGAGCAGGTTCTTGGCCGGAGAAGAGTTCTCACTGGCCGATCTTTCTCACTTGCCCAACACCCATTACCTGATTAACTTAACGGACAGGAAAGAGCTTTTCACTTCGAGGAAGAACGTCGAGCGATGGTGGGGGGAGATTTCAGGCCGAGATTCCTGGAAGAAGGTTGTTCAAATGCAAAAGAAGCGAATCTGA 660 48.64 MAMPVRVYGPPMSTAVSRVLACLLEKDVKFDIIPVDMSKGEHKQPDYLKIQPFGQVPAFKDERISLFESRSICRYVCEKYSNNGNKGLYGLNQIEKASIDQWLEADGQSFNPPSAALVFQLAFAPRMKLKQDENVIKQNEEKLSKVLDVYDERLGTSRFLAGEEFSLADLSHLPNTHYLINLTDRKELFTSRKNVERWWGEISGRDSWKKVVQMQKKRI 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 47879835 47880689 - Bda030139.1 Bda08g01187 12043

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g01187 219 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 84 IPR004045 -
Bda08g01187 219 PANTHER GLUTATHIONE S-TRANSFERASE RHO 4 217 - -
Bda08g01187 219 CDD GST_C_Phi 95 212 IPR034347 -
Bda08g01187 219 SUPERFAMILY GST C-terminal domain-like 84 213 IPR036282 -
Bda08g01187 219 Gene3D Glutaredoxin 2 90 - -
Bda08g01187 219 SUPERFAMILY Thioredoxin-like 3 84 IPR036249 -
Bda08g01187 219 CDD GST_N_Phi 4 79 - -
Bda08g01187 219 SFLD Main (cytGST) 3 216 - -
Bda08g01187 219 Pfam Glutathione S-transferase, N-terminal domain 3 76 IPR004045 -
Bda08g01187 219 Gene3D - 92 212 - -
Bda08g01187 219 Pfam Glutathione S-transferase, C-terminal domain 118 206 IPR004046 -
Bda08g01187 219 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 92 219 IPR010987 -
Bda08g01187 219 SFLD Main.5: Phi-like 3 216 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g01187 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - cpap:110818254 367.081
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00604 Bda-Chr4:54662248 Bda08g01187 Bda-Chr8:47879835 5.98E-60 dispersed
Bda06g00110 Bda-Chr6:1710126 Bda08g01187 Bda-Chr8:47879835 6.60E-12 dispersed
Bda06g00111 Bda-Chr6:1721087 Bda08g01187 Bda-Chr8:47879835 6.60E-12 dispersed
Bda07g01101 Bda-Chr7:12908099 Bda08g01187 Bda-Chr8:47879835 1.49E-71 dispersed
Bda08g00418 Bda-Chr8:4252353 Bda08g01187 Bda-Chr8:47879835 2.04E-09 dispersed
Bda08g00522 Bda-Chr8:5246720 Bda08g01187 Bda-Chr8:47879835 8.46E-10 dispersed
Bda08g01187 Bda-Chr8:47879835 Bda12g00050 Bda-Chr12:336677 1.30E-25 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g151 . . . . . . . . . . . . . . . . . Bhi04g00084 . . . . . . Cla08g01393 Cam08g1867 Cec08g1446 Cco08g1579 Clacu08g1561 . Cre08g1345 . . . Cone20ag0053 . . . Cme03g01542 . . Bda08g01187 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01285 . Chy03g01050 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005856 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 0 1 1 1 1 5 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g01187 Bda_Chr08 FPKM 0.0 0.0 0.722152 0.936931 0.0 0.0 0.0 3.462584 2.633914