Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g01209 ATGAGGAGGATCAATGGCGTCTCTTCGCTTCGCTGCGCTATAACCGGAGGTTCTTCTACCTCCATAATCAACCCTCAGCGATATTTTCGTCAAACTGCGGCTTCACTTTCGCGAAGACTTGCCAATCGAATTAACCTGTCGATTCCGCCGCTTGCGTCCAGTTTCTCAGGTAGCTGCAGGTTCTTTTCTGTCTCTGTCCCGTCTCTCGCTGAAGGAGCCCAGGTTAAGGACCCTCCGCAGTCGAAGAAGTTCGCCGCTAAAGATGTGGTTCTGTATCAGTACGAAGCTTGTCCTTTCTGCAACAAAGTTAAAGCGTTCTTGGATTACTACAATGTTCCATACAAAGTTGTGGAGGTTAATCCCATCTCTAAAAAGGAGGTGAAGTGGTCCCAGTATAAGAAAGTGCCTATTCTGATGGTTGATGGCGAACAGATGGTGGATTCTTCAGATATAATTGATAGCTTGTTCCAAAGAATCAATCCAGAAAACAGTGCTTTAGATGCTGAAGAAGAGAAGAAGTGGCGTGGATGGGTGGACAATCACCTCGTCCATATTCTATCACCAAATATATATAGGAATTGGAAGGAGGCTGTGGAATCATTTAATTACATAACTACGCACGGAAACTTTAGTGCCACGGAGAGGTTAATTGCAAAGTATGGGGGTGCTGCAGCTATGTATTTTGTTTCTAAGAAACTAAAGGAGAGACACAACATTACAGACGAGCGTTCTGCTTTGTATCAAGCTGCAGAAAAGTGGGTTGATGCTCTTGGAGGGCGTCAATATCTTGGTAATTCAGAACCAAATTTAGCTGATCTAGCTGTGTTTGGTGTTTTGAGGCCAATCCGACACCTTCAGTCTGGAAGGGACATGGTGAAGAATACCAGGATTGGTGAATGGTATGATCGTATGGAAACTGTGGTGAGAGGTCATCTCGGACTGTGA 945 44.87 MRRINGVSSLRCAITGGSSTSIINPQRYFRQTAASLSRRLANRINLSIPPLASSFSGSCRFFSVSVPSLAEGAQVKDPPQSKKFAAKDVVLYQYEACPFCNKVKAFLDYYNVPYKVVEVNPISKKEVKWSQYKKVPILMVDGEQMVDSSDIIDSLFQRINPENSALDAEEEKKWRGWVDNHLVHILSPNIYRNWKEAVESFNYITTHGNFSATERLIAKYGGAAAMYFVSKKLKERHNITDERSALYQAAEKWVDALGGRQYLGNSEPNLADLAVFGVLRPIRHLQSGRDMVKNTRIGEWYDRMETVVRGHLGL 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 49615821 49617431 - Bda030190.1 Bda08g01209 12065

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g01209 314 PANTHER GLUTATHIONE S-TRANSFERASE FAMILY PROTEIN 1 309 - -
Bda08g01209 314 ProSiteProfiles Glutaredoxin domain profile. 77 174 - -
Bda08g01209 314 SUPERFAMILY Thioredoxin-like 88 182 IPR036249 -
Bda08g01209 314 Gene3D - 165 311 - -
Bda08g01209 314 SUPERFAMILY GST C-terminal domain-like 168 309 IPR036282 -
Bda08g01209 314 PANTHER MICROSOMAL PROSTAGLANDIN E SYNTHASE-2 1 309 - -
Bda08g01209 314 CDD GST_C_mPGES2 168 308 IPR034335 -
Bda08g01209 314 ProSitePatterns Glutaredoxin active site. 91 107 IPR011767 -
Bda08g01209 314 SFLD Glutathione Transferase (cytosolic) 33 310 IPR040079 -
Bda08g01209 314 Gene3D Glutaredoxin 78 160 - -
Bda08g01209 314 Pfam Glutathione S-transferase, N-terminal domain 91 159 IPR004045 -
Bda08g01209 314 SFLD Prostaglandin E synthase like.1 33 310 IPR034334 GO:0050220
Bda08g01209 314 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 87 163 IPR004045 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g01209 K05309 PTGES2; microsomal prostaglandin-E synthase 2 [EC:5.3.99.3] - pop:7493986 427.557
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g01209 Bda-Chr8:49615821 Bda15g00512 Bda-Chr15:8183462 1.44E-112 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1151 . . . . . . . . Cmo05g00323 Cmo12g00348 . . . Car12g00375 Sed08g0406 . Cpe07g00352 Bhi04g00121 Tan02g2832 Cmetu03g2049 . Hepe10g0170 . Lcy13g1896 Cla08g01407 Cam08g1887 Cec08g1464 Cco08g1597 Clacu08g1579 . Cre08g1362 . . . . . . . . . . Bda08g01209 . . Bpe05g00149 . Bma05g00181 . . . Cma12g00397 Cma05g00320 Car05g00267 . Cpe11g00268 . . . . . . . . . . . . . . . Lsi08g01303 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001449 3 2 2 3 3 2 4 2 2 2 2 2 4 2 2 3 2 2 3 2 2 2 2 2 2 2 2 3 4 2 72