Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g01213 ATGGAGGTCAAGAGCCCACTCCCTTGTCCTAACACAGTCACGGTACGGAGAAACCCTCATCGGAAGGCCCGGGTAACTCCTTTCATCAATCCCCCAGAAAGTTCTGATCATGCATCTTCGTCATCGTCAGCTATGCCCCAAATTTCTTCATTTCCGCTTCAAGAAATTCTTTCAATGGAAATGTCTCGACATCCCAAAGAAGAAGATTCATTTACAGTGTCGTCTGTCACCCAACCCCCAATCTCCGAGAACCTCAAAGTTTATTTAAGAATTCGACCTGTTTCGGTGTCCAAGGGTTTGGGGCAGTGTGGCAGTTTGGGAGATCAAAATGGAAAGCTTAGATTGAAAAATGGGTGGCCGCAAAACCCTGTGAAAAAACACACAGGAAGAGAGAAGAATACGAAGAAGAAGAAAGATGAGGTTTGTTTATCGCTCAATGACTCAAAGTCGGTAATACTATCTCCACCGGTTGCCTTGCAAGAGTCGAAGCGAATAAAATCTGAGGTTTATGAGGGGTTTTCTCATGTCTTCACTGCCGAATCGTCTCAGAATGAAGTGTTTGAAAAGATGGTTAGTCCATTAGTCGAGGATTTCCTCAAGGGTAAAAGTGGTATGGTTGCTGCATTGGGGCCTAGCGGCTCTGGAAAAACCCACACAATTTTTGGGAGCGCAAGGGATCCTGGTATTGTACCCCTCACTTTTCAATATATTTTTAAGCAAGCCGAGAGTCAGGACCTTGATTCCACCAGGTCATTTAGCTTATCGATCTTTGAAATCTATTCTGAACGAAGTAAAGGGGAAAAGATATATGATTTATTAGCAGATGGAGCTGAAGTAAATATGCAGCAATCAGCTATTAAGGGTCTCAAAGAGGTTATCATATATGCTCCCAGGGAAGCAGAATCCATAGTAGCATGTGCCATGCTTAAACGAAATACTGCATCAACTAATGCAAATAGCACGTCCAGCCGGTCGCAGTGCATCATTAACATCCGCCATCTTGCTGGCAAGTTGGATGAGGGAGGTTTTCCTTTAAGTTTCAGCGAAGCTGGCGTTGTTTTAAAAATAGTTGATTTAGCTGGGGCTGAGAGAGAGAAAAGAACTGGAAATAAGGGTTCAAGATTGCTTGAAGCTAACTTTATCAATAACACATCAATGGTTTTGGGTTTGTGCCTAAGATCGTTGTATGAATACCAGAAAAACCCAAAGAAGCCATTGCAGAAGCATTTCCACAACTCTTTGCTGACCAAGTACCTTCGAGACTATTTGGAAGGCAAGAAGCGAATGACATTGATATTAACAGTAAAATCAGGCGCTGAAGACTATGCCGATACATCCTATGTCCTAAGACAAGCTGCACCCTTTATGAAAATCAAGTTCCAAACTGTGGACGAATCATCGAACTTGTCTTCTAACAAGAGGCAGTTGCAAACACTTTTTACGATGGAACAACCTAAAAGGATGAAGTTTAGTGCGCTTGAAGCTTTGGTTGCAGATGGTTCTGAGAATCCATCCTTGAAGTTGGGATGCGCTGGGTCGGAAGAGAAAGAAAGAAGTCATCTTATTATGCAACATTTTGCTAAAGCTCTGTGGAATGTTTTGAAGGAGTATCGAGATAAACTTAAGGTAAATTCAGAAGGTGAAGCTCAGAGTCTACGTGAAAAACTTGTGACACAAACAAAGAGATCTGCTGAGATGGAAGAGCAATTGAAGAGTTTGAAGTATCGCTGCACTTGCTCCAATGAAACCCATTTAGAAACTCTCACTGCTGTAGATGAGAGTTTTACTAGCAGATTGGATGTAAATAAGCTTACTTTTTTTTTATGCTATTGTCAAAAAAGCTATTAA 1848 41.77 MEVKSPLPCPNTVTVRRNPHRKARVTPFINPPESSDHASSSSSAMPQISSFPLQEILSMEMSRHPKEEDSFTVSSVTQPPISENLKVYLRIRPVSVSKGLGQCGSLGDQNGKLRLKNGWPQNPVKKHTGREKNTKKKKDEVCLSLNDSKSVILSPPVALQESKRIKSEVYEGFSHVFTAESSQNEVFEKMVSPLVEDFLKGKSGMVAALGPSGSGKTHTIFGSARDPGIVPLTFQYIFKQAESQDLDSTRSFSLSIFEIYSERSKGEKIYDLLADGAEVNMQQSAIKGLKEVIIYAPREAESIVACAMLKRNTASTNANSTSSRSQCIINIRHLAGKLDEGGFPLSFSEAGVVLKIVDLAGAEREKRTGNKGSRLLEANFINNTSMVLGLCLRSLYEYQKNPKKPLQKHFHNSLLTKYLRDYLEGKKRMTLILTVKSGAEDYADTSYVLRQAAPFMKIKFQTVDESSNLSSNKRQLQTLFTMEQPKRMKFSALEALVADGSENPSLKLGCAGSEEKERSHLIMQHFAKALWNVLKEYRDKLKVNSEGEAQSLREKLVTQTKRSAEMEEQLKSLKYRCTCSNETHLETLTAVDESFTSRLDVNKLTFFLCYCQKSY 615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 49750466 49757098 + Bda030193.1 Bda08g01213 12069

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g01213 615 MobiDBLite consensus disorder prediction 107 137 - -
Bda08g01213 615 Pfam Kinesin motor domain 160 453 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bda08g01213 615 MobiDBLite consensus disorder prediction 1 46 - -
Bda08g01213 615 PANTHER KINESIN-LIKE PROTEIN KIF23 82 569 - -
Bda08g01213 615 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 65 459 IPR027417 -
Bda08g01213 615 PANTHER KINESIN-RELATED 82 569 IPR027640 GO:0003777|GO:0007018
Bda08g01213 615 ProSiteProfiles Kinesin motor domain profile. 84 458 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bda08g01213 615 SMART kinesin_4 82 466 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bda08g01213 615 Gene3D Kinesin motor domain 80 492 IPR036961 -
Bda08g01213 615 PRINTS Kinesin heavy chain signature 201 222 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bda08g01213 615 PRINTS Kinesin heavy chain signature 353 371 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bda08g01213 615 PRINTS Kinesin heavy chain signature 316 333 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bda08g01213 615 PRINTS Kinesin heavy chain signature 408 429 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bda08g01213 615 MobiDBLite consensus disorder prediction 32 46 - -
Bda08g01213 615 Coils Coil 549 569 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g01213 K10401 KIF18_19; kinesin family member 18/19 - qsu:111993036 667.537
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g01213 Bda-Chr8:49750466 Bda06g00496 Bda-Chr6:7075644 3.82E-29 dispersed
Bda08g01213 Bda-Chr8:49750466 Bda15g01073 Bda-Chr15:19967430 9.76E-26 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1139 . . . . . . . . . . . . . . . . . Bhi04g00138 . . . Hepe10g0163 . . Cla08g01415 Cam08g1894 Cec08g1471 Cco08g1604 Clacu08g1586 . Cre08g1369 . . . Cone20ag0437 . . . Cme03g01871 Blo17g00740 . Bda08g01213 . . Bpe05g00146 . . . . . Cma12g00402 . . Car15g00615 . . . . . . . . . . . . . . . . Lsi08g01310 Csa02g02143 Chy03g00784 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005587 1 7 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g01213 Bda_Chr08 FPKM 5.720137 5.437548 10.597427 13.76624 7.673835 9.800616 6.304762 13.910594 11.577496