Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g01214 ATGGCTGATATTCCCTCTGGAACACCGGCAGAAGCTGTTTCAGAGCAAGATTCGTCAGAATATTGGTGCTATCACTGCGATAAACAGGTTATTATTGAAACCCTTGCTAACCCCCCTGACATCATCTGCCATGAGTGCAAGAACGGCTTTGTGGAGTCCATTCCTGCGCGACAACGTCAATCGTCCGATTCAGCTTCTAGATCGTATGAGCAGATTGATGATCCCTCTTTTGAATTCCAGCTCCTCCAGGCGCTGCGGTCGATTGCTCAGACGTTGCGTGACCGTGACGCGACGACTCCACCGACTCAGACCTACCCTCCGGAGGATGATTTTCTAAGGATTGAGCTGGAAGGGTGGGATAACGATGAAGATGATGAGTATACGAACAGATTCGAGCTGCCTGACGAACATGAGGAAGGGAATATAGAGGGAGATGGAAATAGATCTGAAAACGAGGAAGGAGGAAATCAAGATCAGGAAAATGGAGAGGAAGAGGATGTTAGGCGAACGCGGCGTGATGCTCTTCGTCTCCGATTTCAAGACTTTGTGACCATGCCTCGCAGTGGGAGGAACCGGATCTTGGATTGGGCCGAGATTTTGATGGGTGGAGGGGAAAACTCCATTGAGTTTCATCTCGAAGTTCCAGAATCGGATAGATACGTCACCAACCCTGAAGATTATGTGGATGCGGCTGGATACGAGGCTCTTCTGCAAACGTTGGCAGACAGCGATGGAGGAAGGAGAGGGGCACCGCCTGCGTCTAAATCAGTCATATCAGCCCTACCTAGCGTGGAGATCGCTTCTGATGAAGCGGCTATACTGTGCTCCGTCTGTAAGGATATGATCAATGCTGGTGAAATGGCGAAGAAACTACCCTGTGGTCATGGCTACCATGGCGATTGCATAGTTCCTTGGTTGGCATCTCGGAATTCTTGCCCCGTTTGTAGGTTTGAGCTTCAGACTGATGATCCAGAATACGAAGAGGAGAGAAAGAAAAGAGAGAGGGCCAATGTTGGCGAATCTTCTGGTTCTGGTGGATAG 1041 49.66 MADIPSGTPAEAVSEQDSSEYWCYHCDKQVIIETLANPPDIICHECKNGFVESIPARQRQSSDSASRSYEQIDDPSFEFQLLQALRSIAQTLRDRDATTPPTQTYPPEDDFLRIELEGWDNDEDDEYTNRFELPDEHEEGNIEGDGNRSENEEGGNQDQENGEEEDVRRTRRDALRLRFQDFVTMPRSGRNRILDWAEILMGGGENSIEFHLEVPESDRYVTNPEDYVDAAGYEALLQTLADSDGGRRGAPPASKSVISALPSVEIASDEAAILCSVCKDMINAGEMAKKLPCGHGYHGDCIVPWLASRNSCPVCRFELQTDDPEYEEERKKRERANVGESSGSGG 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 49781623 49782663 - Bda030194.1 Bda08g01214 12070

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g01214 346 MobiDBLite consensus disorder prediction 123 169 - -
Bda08g01214 346 Pfam zinc-ribbon 20 54 IPR039525 GO:0061630
Bda08g01214 346 ProSiteProfiles Zinc finger RING-type profile. 275 316 IPR001841 -
Bda08g01214 346 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 35 345 - -
Bda08g01214 346 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 35 345 - -
Bda08g01214 346 MobiDBLite consensus disorder prediction 323 338 - -
Bda08g01214 346 SUPERFAMILY RING/U-box 267 322 - -
Bda08g01214 346 SMART ring_2 275 315 IPR001841 -
Bda08g01214 346 Pfam Zinc finger, C3HC4 type (RING finger) 275 315 - -
Bda08g01214 346 MobiDBLite consensus disorder prediction 130 169 - -
Bda08g01214 346 MobiDBLite consensus disorder prediction 323 346 - -
Bda08g01214 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 242 322 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g01214 - - - twl:120009534 437.573
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g01214 Bda-Chr8:49781623 Bda06g00845 Bda-Chr6:11724372 6.35E-29 dispersed
Bda08g01214 Bda-Chr8:49781623 Bda07g01046 Bda-Chr7:12321900 2.33E-31 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1135 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1413 Cone20ag0070 . . . . Blo17g00233 . Bda08g01214 . . Bpe05g00145 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0017293 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 6
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g01214 Bda_Chr08 FPKM 4.27835 6.422386 13.793115 13.787067 8.067402 10.500827 11.031876 8.637124 11.885178