Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g01218 AAAATGAGAGAGATCCTGCACATTCAGGGAGGTCAATGCGGCAACCAAATCGGATCCAAGTTCTGGGAAGTCATTTGCGACGAGCACGGTGTTGATCCAACTGGTAGGTACAAGGGCGACGATTCTTCCGACCTTCAACTTGAGAGGATTAATGTGTATTACAATGAGGCTTCTGGTGGACGATATGTTCCTAGGGCTGTTCTCATGGATCTCGAACCAGGAACCATGGATAGTATCAGATCCGGGCCGTTTGGTCAGATCTTTCGCCCAGATAATTTTGTCTTTGGTCAGTCCGGCGCAGGGAACAACTGGGCCAAGGGCCATTATACTGAAGGCGCGGAGTTGATTGATGCGGTTCTCGATGTCGTTCGCAAGGAGGCCGAGAATTGTGATTGCTTGCAAGGCTTTCAGGTATGCCACTCGCTTGGAGGGGGCACGGGTTCTGGCATGGGAACGCTGTTGATATCAAAGATTAGAGAGGAATATCCAGACAGGATGATGCTTACTTTCTCGGTTTTCCCTTCCCCAAAGGTCTCAGACACGGTTGTTGAGCCATACAATGCCACTCTCTCAGTTCACCAGTTAGTAGAGAATGCTGATGAATGTATGGTGCTTGATAATGAAGCACTATATGACATTTGCTTCAGGACTCTAAAGCTCACCACTCCAAGCTTTGGTGATCTGAACCACTTAATCTCTGCAACTATGAGTGGTGTTACATGTTGTCTGAGATTCCCTGGTCAGCTGAACTCCGACCTGCGAAAATTGGCGGTGAATCTGATCCCATTCCCACGTTTGCACTTCTTCATGGTGGGCTTTGCCCCTCTCACCTCTCGTGGGTCCCAGCAGTACGTCTCTCTCACTGTCCCAGAACTGACCCAGCAGATGTGGGACTCGAAGAACATGATGTGTGCGGCTGACCCCCGCCATGGCCGCTACCTTACAGCCTCAGCCATGTTCAGGGGGAAGATGAGCACTAAAGAGGTGGATGAGCAGATGATCAATGTGCAGAACAAGAATTCATCATACTTTGTGGAGTGGATTCCTAACAATGTGAAGTCAAGTGTGTGTGATATTCCTCCAAGGGGTCTGAAAATGGCGTCCACTTTCATTGGGAACTCAACCTCTATTCAGGAAATGTTCAGGAGAGTTAGCGAGCAATTCACGGCCATGTTTAGGCGCAAAGCCTTTTTGCATTGGTATACAGGAGAGGGAATGGACGAGATGGAGTTCACCGAGGCCGAGAGCAACATGAATGATTTGGTTGCCGAGTATCAGCAATATCAGGACGCCACCGTCGAGGATGAGGCAGAGTACGAGGAAGGGGAAGAAAATTACAACTAA 1344 49.03 KMREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGRYKGDDSSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYVSLTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATVEDEAEYEEGEENYN 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 50018721 50021191 + Bda030201.1 Bda08g01218 12074

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g01218 447 PRINTS Tubulin signature 135 153 IPR000217 GO:0005874|GO:0007017
Bda08g01218 447 PRINTS Tubulin signature 54 73 IPR000217 GO:0005874|GO:0007017
Bda08g01218 447 PRINTS Tubulin signature 193 213 IPR000217 GO:0005874|GO:0007017
Bda08g01218 447 PRINTS Tubulin signature 11 31 IPR000217 GO:0005874|GO:0007017
Bda08g01218 447 PRINTS Tubulin signature 179 192 IPR000217 GO:0005874|GO:0007017
Bda08g01218 447 PRINTS Tubulin signature 154 175 IPR000217 GO:0005874|GO:0007017
Bda08g01218 447 PRINTS Tubulin signature 109 133 IPR000217 GO:0005874|GO:0007017
Bda08g01218 447 PRINTS Tubulin signature 96 107 IPR000217 GO:0005874|GO:0007017
Bda08g01218 447 PRINTS Tubulin signature 373 401 IPR000217 GO:0005874|GO:0007017
Bda08g01218 447 Coils Coil 411 431 - -
Bda08g01218 447 Pfam Tubulin/FtsZ family, GTPase domain 4 214 IPR003008 GO:0005525
Bda08g01218 447 PRINTS Beta-tubulin signature 215 227 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Bda08g01218 447 PRINTS Beta-tubulin signature 91 102 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Bda08g01218 447 PRINTS Beta-tubulin signature 332 346 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Bda08g01218 447 PRINTS Beta-tubulin signature 380 391 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Bda08g01218 447 PRINTS Beta-tubulin signature 155 167 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Bda08g01218 447 PRINTS Beta-tubulin signature 44 61 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Bda08g01218 447 PRINTS Beta-tubulin signature 248 261 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Bda08g01218 447 PRINTS Beta-tubulin signature 111 129 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Bda08g01218 447 PRINTS Beta-tubulin signature 415 433 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Bda08g01218 447 PRINTS Beta-tubulin signature 268 284 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Bda08g01218 447 PRINTS Beta-tubulin signature 314 332 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Bda08g01218 447 PRINTS Beta-tubulin signature 350 373 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Bda08g01218 447 PRINTS Beta-tubulin signature 233 242 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Bda08g01218 447 CDD beta_tubulin 3 429 - -
Bda08g01218 447 SUPERFAMILY Tubulin nucleotide-binding domain-like 2 246 IPR036525 -
Bda08g01218 447 SMART Tubulin_C_4 249 386 IPR018316 -
Bda08g01218 447 PANTHER TUBULIN 2 443 IPR000217 GO:0005874|GO:0007017
Bda08g01218 447 Gene3D - 266 376 IPR037103 -
Bda08g01218 447 SMART Tubulin_4 50 247 IPR003008 GO:0005525
Bda08g01218 447 Gene3D Helix hairpin bin 377 433 IPR023123 -
Bda08g01218 447 SUPERFAMILY Tubulin C-terminal domain-like 247 432 IPR008280 -
Bda08g01218 447 PANTHER TUBULIN BETA-1 CHAIN-RELATED 2 443 - -
Bda08g01218 447 Pfam Tubulin C-terminal domain 264 385 IPR018316 -
Bda08g01218 447 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 143 149 IPR017975 GO:0005525|GO:0005874|GO:0007017
Bda08g01218 447 Gene3D Tubulin/FtsZ, GTPase domain 2 265 IPR036525 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g01218 K07375 TUBB; tubulin beta - qsu:112021165 870.537
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00518 Bda-Chr8:5226706 Bda08g01218 Bda-Chr8:50018721 0 dispersed
Bda08g01218 Bda-Chr8:50018721 Bda15g00727 Bda-Chr15:10689961 0 dispersed
Bda02g00480 Bda-Chr2:45690956 Bda08g01218 Bda-Chr8:50018721 0 transposed
Bda11g00692 Bda-Chr11:6911975 Bda08g01218 Bda-Chr8:50018721 5.96E-119 transposed
Bda01g00482 Bda-Chr1:31887075 Bda08g01218 Bda-Chr8:50018721 0 wgd
Bda01g01531 Bda-Chr1:51195512 Bda08g01218 Bda-Chr8:50018721 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1118 Blo01g01599 . . . . . . Bma01g02369 Cmo05g00312 Cmo12g00357 . . . Car12g00384 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda08g01218 . . . Bma01g00727 . . . . . Cma05g00309 Car05g00257 . Cpe11g00258 . . . . . . . . . . . . . . . . Csa02g02138 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000127 7 8 7 13 9 7 3 7 7 7 7 7 11 7 7 12 6 15 3 7 7 7 6 8 1 6 8 9 9 2 220
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g01218 Bda_Chr08 FPKM 23.902039 27.391266 26.199287 26.562778 17.792969 20.022907 18.471813 35.479977 32.444981