Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g01226 ATGGATAGCACCTGCGATTCTAGTTTTTCCTCTTCGTTTGATCGGTCTTCATCTTCTGTTTCTCATATTTATTTGGATTCAGCTGGTTCTGGAGCTTCTCCAATGGCGGTATCCATGCGTCATCCGTTGTCGCCTAGTTTGAGTCCTGAGAATTTTAAGAGACCTGGCATACCTCCATCGTACCCTAGTAATCCATTTTCACTCCCTAATTCACAGACCTCACCTTCCCAACCAGTTTCTGGGCAAATGAGCTCTCAGAATTTCAGCTCAGGTCATTCCCATTCTAGGTCTTTATCTCAACCTTCATTTTTCTCGCTCGACTGTCTTCCACCATTGAGCCCATCCCCTTATCGCGAGTCCTCAACTTCTTTGCTTAGTGATACTGTTTCCACTGAAGTTCCAATGGACGATGATGTAATGCATTCTAATACTGCTTCTCTTCCTTCGCCTGCTTCAGGCATCGGCAAGGCTCGTTTTTCTGACGGGCTTCCTCCTCGCAGGGGTCATAGACGCTCTAATAGTGATATTCCATTAGGATTTATGCACTCCTCACCTCCATTGGTTCCATTTGGTGTTTCAGACCAGGCTCTTTCAATTCAAGAAAATTGGGGACTAGACAAGCAGGTTCAGTTTATCAAGCAGGGTTCTTTTTGGGATAGAGATCGAATTAGTAATTCAGATGTTATAATGAGTGGGAGGAAGTCTGACACAGAAATTACAGACGACTTATTAAATGCTTACTTGAATCTGGAAAACATTGATAAGATGAATTCATCTGATACTGAAGATAAGGATTTGTATAGCAAAGCCAGTGGCTCGAAGACAAATGGATGCGAAAGTAGTGATAATGAAGTGGAAAGTTGCGGCAATGGTTCATTTTCAAGGTCTTCCAATGGTAAGAGAGAAGGACTCAAGAGAAGTGCCAGTGGAGATACAGCAGCACCTACCCGACACTATAGGAGTCTTTCCATGGATAGTTATATGGGAAGCTTGAATTTCGACAGTGAACCACATAATCTTAGCAATGCGAACAATGACCCGAATAAGTTCAGCGTGGAAATTGGTAGCAACGAGTTCAGTGAAGCTGAGGTGAAGAAGATTATGGAAAATGATAAACTTGCTGACCTTGCATCGTCAGACCCCAAACGCGTGAAGAGGTATTGTGTCGTCTGTTACTGGTGTCGACATAAAAAAATATTTTTCCTCATCGTTGCCGATTTGCTCAGGATTTTGGCTAATCGACAATCAGCTGCGCGCTCCAAAGAGAGGAAAATGCGATACATTGTGGAACTAGAGCACAAGGTGCAAACTTTGCAAACAGAAGCAACCACATTGTCTGCACAGGTTACAAGATTGCAGAGAGACTCAGCAGGGCTATCTAGCGATAACAATGAGCTGAAATTTCGTGTTCAGGCCTTCGAGCAACAGGCCCAGCTCAAGGATGCCTTAAATGAAGCCTTGTCTGCTGAAGTTCAGCGCTTAAAAATCGTGGCTGCAGAACTGGGTGGGGAAGCACACCTCTCGAATCGGATGGCTCAGCAGCTCTCTATCAACCAACAAAGCTTCCATGTGTCAAACCAACGCACTGCCCACATTAACCTCTATCAGCACAGTAATTTACTTCCCAAGAGGCAGAATGGCGAGGCTTCTAAGCCATGA 1659 44.36 MDSTCDSSFSSSFDRSSSSVSHIYLDSAGSGASPMAVSMRHPLSPSLSPENFKRPGIPPSYPSNPFSLPNSQTSPSQPVSGQMSSQNFSSGHSHSRSLSQPSFFSLDCLPPLSPSPYRESSTSLLSDTVSTEVPMDDDVMHSNTASLPSPASGIGKARFSDGLPPRRGHRRSNSDIPLGFMHSSPPLVPFGVSDQALSIQENWGLDKQVQFIKQGSFWDRDRISNSDVIMSGRKSDTEITDDLLNAYLNLENIDKMNSSDTEDKDLYSKASGSKTNGCESSDNEVESCGNGSFSRSSNGKREGLKRSASGDTAAPTRHYRSLSMDSYMGSLNFDSEPHNLSNANNDPNKFSVEIGSNEFSEAEVKKIMENDKLADLASSDPKRVKRYCVVCYWCRHKKIFFLIVADLLRILANRQSAARSKERKMRYIVELEHKVQTLQTEATTLSAQVTRLQRDSAGLSSDNNELKFRVQAFEQQAQLKDALNEALSAEVQRLKIVAAELGGEAHLSNRMAQQLSINQQSFHVSNQRTAHINLYQHSNLLPKRQNGEASKP 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 50159097 50161318 - Bda030215.1 Bda08g01226 12082

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g01226 552 CDD bZIP_plant_RF2 409 457 IPR044759 GO:0003700|GO:0006355
Bda08g01226 552 Gene3D - 407 456 - -
Bda08g01226 552 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 409 539 - -
Bda08g01226 552 MobiDBLite consensus disorder prediction 141 180 - -
Bda08g01226 552 PANTHER ZIPPER TRANSCRIPTION FACTOR FAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED 69 387 - -
Bda08g01226 552 MobiDBLite consensus disorder prediction 258 316 - -
Bda08g01226 552 SUPERFAMILY Leucine zipper domain 409 456 IPR046347 GO:0003700|GO:0006355
Bda08g01226 552 MobiDBLite consensus disorder prediction 270 298 - -
Bda08g01226 552 MobiDBLite consensus disorder prediction 66 96 - -
Bda08g01226 552 SMART brlzneu 404 465 IPR004827 GO:0003700|GO:0006355
Bda08g01226 552 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 69 387 - -
Bda08g01226 552 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 409 466 IPR004827 GO:0003700|GO:0006355
Bda08g01226 552 Coils Coil 428 455 - -
Bda08g01226 552 MobiDBLite consensus disorder prediction 30 96 - -
Bda08g01226 552 PANTHER ZIPPER TRANSCRIPTION FACTOR FAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED 409 539 - -
Bda08g01226 552 Pfam bZIP transcription factor 409 463 IPR004827 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g01226 - - - tcc:18591502 480.715
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g01226 Bda-Chr8:50159097 Bda15g01060 Bda-Chr15:19727057 4.98E-142 dispersed
Bda14g00583 Bda-Chr14:4466701 Bda08g01226 Bda-Chr8:50159097 6.74E-150 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1062 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1388 Cone20ag0093 . . . . Blo17g00749 . Bda08g01226 . . . . Bma05g00160 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015918 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 0 7
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16320 PF00170 bZIP_1 2.20E-08 CL0018 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g01226 Bda_Chr08 FPKM 5.507812 11.747062 2.205543 2.599455 17.247158 10.931075 12.254776 7.338891 7.995196