Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g01229 ATGGATGACAGAAGCCATCGCGAAAATGGAAGGCACAAAGCAGATCAGTACAAGGCAGCTCAAAGCCAGTGGTTGATGCATCCCCAGCCATCAATGAAACAGATAATGGCTATTATGGCTGAAAGAGATGCAGCCATTCAGGAGCGAAATTTGGCCCTATCTGAGAAAAAGGCAGCTCTTGCTGAGCGAGATATGGCAATCCTGCAACGGGATACGGCAATTGCAGAAAGAAATAATGCCTTATTGGAAAGAGACAATGCTATTGCAACTCTTCAATTCCGTGAAAACTCCTTAAGCAGTGGTAGTATGTCATGTCCACCAGGTTGCCAAATCGCACGAGGAGTCAAGCATATGCATCATCCACAGCAACATTCACATAATGTTCCTCACATGCATGAAGGTCCTTATAGTAATAGGGAAATGCACCCAATTGATTCTGTCCCTGTTTCACCAGTACCTTCAGAAGCCACAAAGACAAAGCGCATCAAACGGACTAAGGAAACAAAAGCAGTATCAGGTAATAAGAAAGCTTTGAAACCTTCAAGAAAGACTAAGAGGGAAGGTGGGGACTTGAACAAGGATATGTTTGGCGAACCACATGAGTGGAAGAATGGACATTACATGGGTTGTGGAGGCGACGATCTTAACAAACAATTTGTGGCTTCAAAGTCAGATTGGAAGGTTCAGGACCTTGGTTTGAACCAGGTTGCTTTTGATGAATCAACCATGCCAGCACCAATTTGCTCTTGTACTGCAGTCCCGAGACAGTGCTACAAATGGGGAAATGGTGGGTGGCAATCTGCATGTTGTACAACCACCATGTCAATGTATCCTCTACCAGCCGTGCCAAACAAACGGCATGCCCGAGTGGGTGGTAGAAAAATGAGTGGAAGTGCCTTTAACAAGCTTCTTAGCCGGCTTGCCGCGGAAGGCCACGACCTCTCGGCCCCAATTGATCTTCATAATCATTGGGCCAAGCATGGAACAAATCGCTACATCACAATAAAG 1008 45.73 MDDRSHRENGRHKADQYKAAQSQWLMHPQPSMKQIMAIMAERDAAIQERNLALSEKKAALAERDMAILQRDTAIAERNNALLERDNAIATLQFRENSLSSGSMSCPPGCQIARGVKHMHHPQQHSHNVPHMHEGPYSNREMHPIDSVPVSPVPSEATKTKRIKRTKETKAVSGNKKALKPSRKTKREGGDLNKDMFGEPHEWKNGHYMGCGGDDLNKQFVASKSDWKVQDLGLNQVAFDESTMPAPICSCTAVPRQCYKWGNGGWQSACCTTTMSMYPLPAVPNKRHARVGGRKMSGSAFNKLLSRLAAEGHDLSAPIDLHNHWAKHGTNRYITIK 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 50234117 50235238 - Bda034045 Bda08g01229 12085

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g01229 336 SMART GAGA_bind_2 1 336 IPR010409 -
Bda08g01229 336 Coils Coil 51 85 - -
Bda08g01229 336 MobiDBLite consensus disorder prediction 146 197 - -
Bda08g01229 336 Pfam GAGA binding protein-like family 1 336 IPR010409 -
Bda08g01229 336 PANTHER - 1 336 IPR010409 -
Bda08g01229 336 PANTHER PROTEIN BASIC PENTACYSTEINE6 1 336 - -
Bda08g01229 336 MobiDBLite consensus disorder prediction 157 173 - -
Bda08g01229 336 MobiDBLite consensus disorder prediction 183 197 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g01229 - - - jre:108983830 540.036
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01528 Bda-Chr1:51168262 Bda08g01229 Bda-Chr8:50234117 0 dispersed
Bda08g01229 Bda-Chr8:50234117 Bda15g01061 Bda-Chr15:19733767 5.23E-110 dispersed
Bda08g01227 Bda-Chr8:50167744 Bda08g01229 Bda-Chr8:50234117 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1058 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda08g01229 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda10g01165 . 1 280 BBR/BPC Transcription factor family AT2G01930 55.7 2.4e-82 302.4
Bda07g01452 . 1 281 BBR/BPC Transcription factor family AT2G01930 54.8 1.1e-76 283.5
Bda10g01166 . 1 278 BBR/BPC Transcription factor family AT2G01930 52.0 4.6e-70 261.5
Bda10g01166 . 160 278 BBR/BPC Transcription factor family AT2G35550 58.8 3.6e-41 165.2
Bda07g01452 . 161 281 BBR/BPC Transcription factor family AT2G35550 57.9 4.7e-41 164.9
Bda10g01165 . 153 280 BBR/BPC Transcription factor family AT2G35550 57.0 2.3e-40 162.5
Bda10g01165 . 1 280 BBR/BPC Transcription factor family AT1G68120 52.0 5.9e-75 277.7
Bda08g01227 BCT 227 336 BBR/BPC Transcription factor family AT1G68120 56.4 3.8e-37 152.1
Bda08g01229 . 227 336 BBR/BPC Transcription factor family AT1G68120 56.4 3.8e-37 152.1
Bda01g01528 BCT 227 336 BBR/BPC Transcription factor family AT1G68120 55.5 1.4e-36 150.2
Bda15g01061 . 102 269 BBR/BPC Transcription factor family AT2G21240 66.9 2.2e-62 236.1
Bda08g01227 BCT 1 336 BBR/BPC Transcription factor family AT2G21240 50.7 3.1e-61 232.3
Bda08g01229 . 1 336 BBR/BPC Transcription factor family AT2G21240 50.7 3.1e-61 232.3
Bda14g01478 . 1 273 BBR/BPC Transcription factor family AT2G21240 60.4 1.6e-60 229.9
Bda15g01061 . 1 269 BBR/BPC Transcription factor family AT4G38910 58.4 4.5e-57 218.4
Bda14g01478 . 1 273 BBR/BPC Transcription factor family AT4G38910 58.0 8.8e-53 204.1
Bda08g01227 BCT 88 336 BBR/BPC Transcription factor family AT5G42520 57.7 1.9e-76 282.7
Bda08g01229 . 88 336 BBR/BPC Transcription factor family AT5G42520 57.7 1.9e-76 282.7
Bda01g01528 BCT 87 336 BBR/BPC Transcription factor family AT5G42520 54.3 3.5e-70 261.9
Bda14g01478 . 100 273 BBR/BPC Transcription factor family AT5G42520 51.2 5.1e-45 178.3
Bda10g01166 . 160 278 BBR/BPC Transcription factor family AT2G35550 58.8 3.6e-41 165.2
Bda07g01452 . 161 281 BBR/BPC Transcription factor family AT2G35550 57.9 4.7e-41 164.9
Bda10g01165 . 153 280 BBR/BPC Transcription factor family AT2G35550 57.0 2.3e-40 162.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004398 3 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16322 PF06217 GAGA_bind 6.60E-103 No_clan Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g01229 Bda_Chr08 FPKM 0.26981 0.648505 6.811241 7.296679 3.911088 4.753054 4.184326 0.72703 0.733232