Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g01232 AAAATGTCTTCAACGTTCAGCGGCGATGAGACGGCACCGTTTTTTGGCTTCCTTGGCGCTGCCGCCGCCCTCGTTTTCTCCTGTATGGGAGCTGCGTACGGAACGGCGAAAAGCGGGGTTGGGGTGGCATCGATGGGTGTGATGAGGCCCGAGCTGGTGATGAAATCGATTGTGCCTGTTGTTATGGCCGGAGTTTTGGGTATCTACGGTCTGATCATTGCTGTGATTATTAGCACAGGGATTAACCCCAAGGCCAAATCCTATTACCTTTTTGATGGCTACGCCCATCTGTCCTCTGGTCTTGCTTGTGGCCTTGCTGGTCTCTCTGCTGGCATGGCAATTGGAATCGTCGGAGATGCTGGTGTTAGAGCCAATGCGCAGCAACCAAAGCTGTTTGTTGGGATGATTCTCATTCTCATCTTCGCTGAAGCACTTGCCCTGTATGGCCTCATTGTTGGCATTATCCTCTCTTCACGAGCAGGTCAGTCCAGAGCCGAATAA 501 52.1 KMSSTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 50482970 50484393 + Bda030225.1 Bda08g01232 12088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g01232 166 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 4 166 - -
Bda08g01232 166 CDD ATP-synt_Vo_c_ATP6C_rpt2 90 157 - -
Bda08g01232 166 Gene3D - 12 163 IPR035921 -
Bda08g01232 166 PRINTS Vacuolar ATP synthase 16kDa subunit signature 31 55 IPR000245 GO:0033179|GO:0046961|GO:1902600
Bda08g01232 166 PRINTS Vacuolar ATP synthase 16kDa subunit signature 57 81 IPR000245 GO:0033179|GO:0046961|GO:1902600
Bda08g01232 166 PRINTS Vacuolar ATP synthase 16kDa subunit signature 108 134 IPR000245 GO:0033179|GO:0046961|GO:1902600
Bda08g01232 166 PRINTS Vacuolar ATP synthase 16kDa subunit signature 135 158 IPR000245 GO:0033179|GO:0046961|GO:1902600
Bda08g01232 166 SUPERFAMILY F1F0 ATP synthase subunit C 15 78 IPR035921 -
Bda08g01232 166 CDD ATP-synt_Vo_c_ATP6C_rpt1 14 81 - -
Bda08g01232 166 SUPERFAMILY F1F0 ATP synthase subunit C 88 157 IPR035921 -
Bda08g01232 166 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 14 122 IPR011555 GO:0033179|GO:0046961|GO:1902600
Bda08g01232 166 Pfam ATP synthase subunit C 18 77 IPR002379 GO:0015078|GO:0033177|GO:1902600
Bda08g01232 166 Pfam ATP synthase subunit C 98 156 IPR002379 GO:0015078|GO:0033177|GO:1902600
Bda08g01232 166 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 4 166 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g01524 Bda08g01232 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00060 Bda-Chr3:702498 Bda08g01232 Bda-Chr8:50482970 4.16E-23 dispersed
Bda06g00898 Bda-Chr6:17380457 Bda08g01232 Bda-Chr8:50482970 1.62E-113 transposed
Bda01g01524 Bda-Chr1:51150846 Bda08g01232 Bda-Chr8:50482970 3.62E-113 wgd
Bda08g00963 Bda-Chr8:18911450 Bda08g01232 Bda-Chr8:50482970 6.81E-108 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g01232 K02155 - cit:102607521 288.5