Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g01236 ATGAAGATCCGCTGCGACGTCTGCGAACTAGACGAAGCCTCTGTTTTCTGCGTCGCCGACGAAGCCGCCGTTTGCGCTGCTTGCGACCACCGTGTCCACCATGCGAACAAGCTTGCTTCGAAGCACCGTCGGTTTTCTCTTCTCCAACCATCCTCTGCGAAGCAATCCCCTCTCTGCGATGTCTGCCAAGAGAAGAGAGCTTTTTTGTTCTGTCAGCAGGATAGAGCGATGCTTTGTAGAGACTGTGACGTTCCGATTCATGGCGCTAACGAGCTCAAGAAAAAGCACGATCGGTTTCTTCTGACTGGGATTAGGCTTTCGGCGACGTCTGATTTATATACACCATCTAAACCAGCCTTAACCGATGGAAATCCTATTTTTGGTTCTGATCTTAAACCAAAGCCTGTGGTTAAGAAACCTGTTTCTGAGTCTGTTTCTGCTTCGTCTGCAATGCTGAATCTGGAATCTGGCAGTAAAACTTCGTCAAATATACCACATGGCGTGCCTTTGAATAAGGGCGATGAGGAAAATTGGATAGCTAATGAAGGGGGTGGCTCGTCCAGTAGCATCTCTGAGTATTTGATAGAGACGCTTCCTGGGTGGCACGTTGAAGATTTTCTGGACTCGTCGCCGGCTCCTTTTGGGTTTTGTAAGACTGATGAAACAATCCTTCCATTGATGGATGATGAACTCGAAAACAGTTTGAGTGTTTTCTGGGTTCCTCAGGCAGCATCTTCTCTGGGTCCTCCAGAAACGATGAGTGGGCTGAATATGTCAGATGAACCAGAAGATTGGAACGTCAAAGTGAACAGAGGAGAGTCAGGGTGGATAGATGATGGTTTCACAGTCCCACAAATCAACCCTGCATCTTCTGGGTTCAAGAGATCCAGGCCATTTTGGTAG 903 47.95 MKIRCDVCELDEASVFCVADEAAVCAACDHRVHHANKLASKHRRFSLLQPSSAKQSPLCDVCQEKRAFLFCQQDRAMLCRDCDVPIHGANELKKKHDRFLLTGIRLSATSDLYTPSKPALTDGNPIFGSDLKPKPVVKKPVSESVSASSAMLNLESGSKTSSNIPHGVPLNKGDEENWIANEGGGSSSSISEYLIETLPGWHVEDFLDSSPAPFGFCKTDETILPLMDDELENSLSVFWVPQAASSLGPPETMSGLNMSDEPEDWNVKVNRGESGWIDDGFTVPQINPASSGFKRSRPFW 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 50639497 50640659 - Bda030233.1 Bda08g01236 12092

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g01236 300 ProSiteProfiles Zinc finger B-box type profile. 54 101 IPR000315 GO:0008270
Bda08g01236 300 Pfam B-box zinc finger 55 97 IPR000315 GO:0008270
Bda08g01236 300 Gene3D Classic Zinc Finger 1 97 - -
Bda08g01236 300 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Bda08g01236 300 CDD Bbox1_BBX-like 5 47 - -
Bda08g01236 300 PANTHER B-BOX ZINC FINGER PROTEIN 19 1 298 - -
Bda08g01236 300 SMART bboxneu5 4 47 IPR000315 GO:0008270
Bda08g01236 300 SMART bboxneu5 54 101 IPR000315 GO:0008270
Bda08g01236 300 CDD Bbox1_BBX-like 58 101 - -
Bda08g01236 300 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 298 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g01236 - - - tcc:18591484 322.013
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g00506 Bda08g01236 CCT
Bda01g00506 Bda08g01236 ECH
Bda01g01521 Bda08g01236 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00809 Bda-Chr5:56536770 Bda08g01236 Bda-Chr8:50639497 3.00E-37 dispersed
Bda06g00954 Bda-Chr6:26410287 Bda08g01236 Bda-Chr8:50639497 7.77E-60 dispersed
Bda08g01236 Bda-Chr8:50639497 Bda11g01843 Bda-Chr11:53635914 1.38E-23 dispersed
Bda03g00975 Bda-Chr3:8813827 Bda08g01236 Bda-Chr8:50639497 2.07E-37 transposed
Bda01g00506 Bda-Chr1:32057229 Bda08g01236 Bda-Chr8:50639497 8.21E-62 wgd
Bda01g01521 Bda-Chr1:51110063 Bda08g01236 Bda-Chr8:50639497 2.45E-135 wgd
Bda14g00574 Bda-Chr14:4384124 Bda08g01236 Bda-Chr8:50639497 8.68E-62 wgd
Bda08g00955 Bda-Chr8:18590465 Bda08g01236 Bda-Chr8:50639497 6.08E-60 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1041 Blo01g01583 . Bda01g00506 . Bpe02g00365 . . . Cmo05g00289 Cmo12g00380 Cma01g01945 . Car01g01519 Car12g00406 . . Cpe07g00385 Bhi04g00162 . . . . . . Cla08g01445 Cam08g1926 Cec08g1501 Cco08g1638 Clacu08g1616 . Cre08g1403 Cone4ag1948 . Cone17ag1378 Cone20ag0105 . . . Cme03g01907 . Blo18g00789 Bda08g01236 Bda01g01521 Bpe02g01717 Bpe05g00126 Bma01g00739 Bma05g00152 . Cmo01g02006 . Cma12g00429 Cma05g00283 . . Cpe11g00234 Cpe02g00094 . . . . . . . Cla11g00377 Cam11g0424 Cec11g0420 Cco11g0413 Clacu11g0546 Cmu11g0403 Cre11g0890 Lsi08g01348 Csa02g02104 Chy03g01411 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda14g00661 . 1 408 C2C2-CO-like Transcription Factor Family AT3G07650 50.2 1.3e-72 270.4
Bda14g00574 CCT,ECH 1 188 C2C2-CO-like Transcription Factor Family AT1G75540 53.4 6.6e-52 201.4
Bda06g00954 BCT,CCT,ECH 1 197 C2C2-CO-like Transcription Factor Family AT1G75540 54.4 8.7e-52 201.1
Bda08g00955 BCT,CCT,ECH 1 194 C2C2-CO-like Transcription Factor Family AT1G75540 53.4 2.5e-51 199.5
Bda10g00172 CCT,ECH 1 177 C2C2-CO-like Transcription Factor Family AT2G21320 62.1 1.6e-52 202.6
Bda14g00989 . 1 176 C2C2-CO-like Transcription Factor Family AT2G21320 59.1 1.1e-50 196.4
Bda11g01843 CCT,ECH 1 182 C2C2-CO-like Transcription Factor Family AT2G21320 57.7 1.9e-50 195.7
Bda10g00172 CCT,ECH 1 176 C2C2-CO-like Transcription Factor Family AT4G38960 62.9 1.8e-54 209.1
Bda11g01843 CCT,ECH 1 180 C2C2-CO-like Transcription Factor Family AT4G38960 59.4 1.1e-51 199.9
Bda14g00989 . 1 174 C2C2-CO-like Transcription Factor Family AT4G38960 58.6 2.9e-49 191.8
Bda06g00954 BCT,CCT,ECH 1 193 C2C2-CO-like Transcription Factor Family AT4G39070 58.0 2.8e-55 212.2
Bda08g00955 BCT,CCT,ECH 1 189 C2C2-CO-like Transcription Factor Family AT4G39070 56.7 4.7e-55 211.5
Bda14g00574 CCT,ECH 1 181 C2C2-CO-like Transcription Factor Family AT4G39070 54.5 5.7e-53 204.5
Bda08g01236 BCT,CCT,ECH 1 208 C2C2-CO-like Transcription Factor Family AT4G39070 51.9 1.2e-47 186.8
Bda01g00506 CCT,ECH 1 112 C2C2-CO-like Transcription Factor Family AT4G39070 64.3 3.1e-38 155.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004397 2 1 1 2 2 1 1 2 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 2 3 1 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16323 PF00643 zf-B_box 3.40E-07 No_clan Bda TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g01236 Bda_Chr08 FPKM 0.13217 0.149698 0.302109 0.0 0.96734 0.964668 1.28593 0.410734 0.187599