Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda08g01236 | ATGAAGATCCGCTGCGACGTCTGCGAACTAGACGAAGCCTCTGTTTTCTGCGTCGCCGACGAAGCCGCCGTTTGCGCTGCTTGCGACCACCGTGTCCACCATGCGAACAAGCTTGCTTCGAAGCACCGTCGGTTTTCTCTTCTCCAACCATCCTCTGCGAAGCAATCCCCTCTCTGCGATGTCTGCCAAGAGAAGAGAGCTTTTTTGTTCTGTCAGCAGGATAGAGCGATGCTTTGTAGAGACTGTGACGTTCCGATTCATGGCGCTAACGAGCTCAAGAAAAAGCACGATCGGTTTCTTCTGACTGGGATTAGGCTTTCGGCGACGTCTGATTTATATACACCATCTAAACCAGCCTTAACCGATGGAAATCCTATTTTTGGTTCTGATCTTAAACCAAAGCCTGTGGTTAAGAAACCTGTTTCTGAGTCTGTTTCTGCTTCGTCTGCAATGCTGAATCTGGAATCTGGCAGTAAAACTTCGTCAAATATACCACATGGCGTGCCTTTGAATAAGGGCGATGAGGAAAATTGGATAGCTAATGAAGGGGGTGGCTCGTCCAGTAGCATCTCTGAGTATTTGATAGAGACGCTTCCTGGGTGGCACGTTGAAGATTTTCTGGACTCGTCGCCGGCTCCTTTTGGGTTTTGTAAGACTGATGAAACAATCCTTCCATTGATGGATGATGAACTCGAAAACAGTTTGAGTGTTTTCTGGGTTCCTCAGGCAGCATCTTCTCTGGGTCCTCCAGAAACGATGAGTGGGCTGAATATGTCAGATGAACCAGAAGATTGGAACGTCAAAGTGAACAGAGGAGAGTCAGGGTGGATAGATGATGGTTTCACAGTCCCACAAATCAACCCTGCATCTTCTGGGTTCAAGAGATCCAGGCCATTTTGGTAG | 903 | 47.95 | MKIRCDVCELDEASVFCVADEAAVCAACDHRVHHANKLASKHRRFSLLQPSSAKQSPLCDVCQEKRAFLFCQQDRAMLCRDCDVPIHGANELKKKHDRFLLTGIRLSATSDLYTPSKPALTDGNPIFGSDLKPKPVVKKPVSESVSASSAMLNLESGSKTSSNIPHGVPLNKGDEENWIANEGGGSSSSISEYLIETLPGWHVEDFLDSSPAPFGFCKTDETILPLMDDELENSLSVFWVPQAASSLGPPETMSGLNMSDEPEDWNVKVNRGESGWIDDGFTVPQINPASSGFKRSRPFW | 300 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 50639497 | 50640659 | - | Bda030233.1 | Bda08g01236 | 12092 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda08g01236 | 300 | ProSiteProfiles | Zinc finger B-box type profile. | 54 | 101 | IPR000315 | GO:0008270 | |
| Bda08g01236 | 300 | Pfam | B-box zinc finger | 55 | 97 | IPR000315 | GO:0008270 | |
| Bda08g01236 | 300 | Gene3D | Classic Zinc Finger | 1 | 97 | - | - | |
| Bda08g01236 | 300 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270 | |
| Bda08g01236 | 300 | CDD | Bbox1_BBX-like | 5 | 47 | - | - | |
| Bda08g01236 | 300 | PANTHER | B-BOX ZINC FINGER PROTEIN 19 | 1 | 298 | - | - | |
| Bda08g01236 | 300 | SMART | bboxneu5 | 4 | 47 | IPR000315 | GO:0008270 | |
| Bda08g01236 | 300 | SMART | bboxneu5 | 54 | 101 | IPR000315 | GO:0008270 | |
| Bda08g01236 | 300 | CDD | Bbox1_BBX-like | 58 | 101 | - | - | |
| Bda08g01236 | 300 | PANTHER | B-BOX ZINC FINGER PROTEIN 22 | 1 | 298 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Bda01g00506 | Bda08g01236 | CCT | |
| Bda01g00506 | Bda08g01236 | ECH | |
| Bda01g01521 | Bda08g01236 | BCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda05g00809 | Bda-Chr5:56536770 | Bda08g01236 | Bda-Chr8:50639497 | 3.00E-37 | dispersed | |
| Bda06g00954 | Bda-Chr6:26410287 | Bda08g01236 | Bda-Chr8:50639497 | 7.77E-60 | dispersed | |
| Bda08g01236 | Bda-Chr8:50639497 | Bda11g01843 | Bda-Chr11:53635914 | 1.38E-23 | dispersed | |
| Bda03g00975 | Bda-Chr3:8813827 | Bda08g01236 | Bda-Chr8:50639497 | 2.07E-37 | transposed | |
| Bda01g00506 | Bda-Chr1:32057229 | Bda08g01236 | Bda-Chr8:50639497 | 8.21E-62 | wgd | |
| Bda01g01521 | Bda-Chr1:51110063 | Bda08g01236 | Bda-Chr8:50639497 | 2.45E-135 | wgd | |
| Bda14g00574 | Bda-Chr14:4384124 | Bda08g01236 | Bda-Chr8:50639497 | 8.68E-62 | wgd | |
| Bda08g00955 | Bda-Chr8:18590465 | Bda08g01236 | Bda-Chr8:50639497 | 6.08E-60 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 16323 | PF00643 | zf-B_box | 3.40E-07 | No_clan | Bda | TR |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda08g01236 | - | - | tcc:18591484 | 322.013 |