Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda08g01246 | ATGGCTAGTTTTTTCTATCTAGGCGGTAGAGACCAAGATCCACGAAACAAGGAAAGCGAAGGAGAAGAAGAAGATCAGAGGGCGCAAAACCTATATTTATACAGACAAGAAGAGATCTACAACAAGGGCTTCGAGATATGGCCTCAGTACAATCAGCAAAACATGAGCAACTACTTGTCTTTCGGAGTGGGTCCGAGCCGAAGAAACTTCATGAATGTCTCTGAGCACACTTCATCAAGATCAGGAGGAGGGGTGAATTGCCAAGACTGTGGAAATCAAGCCAAGAAAGACTGTTCTTATTTGCGGTGTAGAACTTGTTGCAAAAGCAGAGGGTTTCAATGTCAAACCCATGTCAGAAGCACGTGGGTTCCGGCGGCTAAACGCCGGGAGAGGCAGCAGCAACTTGCGGCCTTTCATTGTCAACCGCCGGAAGAGCCACCACAGCCTCGTGCAGGAGAGAATACGAAAAAGATTAGGGAGCTTCAGGTGGGAGGTTCTTCTTCTCTTGCCGCCTCTCGTTTACCCACCATTACATCAGGGTTAGAGCTGACGCAGTTTCCAGCTGAAGTGAATTCCCCAGCCGTGTTTCGCTGCGTAAAAGTCAGCCCAGTATATGACGCAGATGAACAGTTTGCATATCAGACGGCTGTAAACATCGGCGGACATGTTTTCAAAGGAATTCTTTATGACCAAGGCCCAGAAAGTCGTTACGCCGGCGGGGGTGGTGAAGGCTCCTCCGTCCACGGCGCAGATGGAGCTCAGCAACTTAATCTTATTACAGGACCCTCCTGCACCATAGCCGCTGCAACTACTAGTAATCCTTCTGCTACAATGCTAGACCCTTCTCTATATCCAGCTCCCCTTACTGCATTCATAGCTGGTACGCAATTCTTCCCACCTTCAAGGCCATGA | 912 | 49.12 | MASFFYLGGRDQDPRNKESEGEEEDQRAQNLYLYRQEEIYNKGFEIWPQYNQQNMSNYLSFGVGPSRRNFMNVSEHTSSRSGGGVNCQDCGNQAKKDCSYLRCRTCCKSRGFQCQTHVRSTWVPAAKRRERQQQLAAFHCQPPEEPPQPRAGENTKKIRELQVGGSSSLAASRLPTITSGLELTQFPAEVNSPAVFRCVKVSPVYDADEQFAYQTAVNIGGHVFKGILYDQGPESRYAGGGGEGSSVHGADGAQQLNLITGPSCTIAAATTSNPSATMLDPSLYPAPLTAFIAGTQFFPPSRP | 303 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 50963196 | 50964540 | - | Bda030251.1 | Bda08g01246 | 12102 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda08g01246 | 303 | PANTHER | PROTEIN SHI RELATED SEQUENCE 7 | 1 | 300 | - | - | |
Bda08g01246 | 303 | Pfam | Domain of unknown function (DUF702) | 84 | 234 | - | - | |
Bda08g01246 | 303 | TIGRFAM | LRP1_Cterm: LRP1 C-terminal domain | 185 | 233 | IPR006511 | - | |
Bda08g01246 | 303 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Bda08g01246 | 303 | PANTHER | PROTEIN LATERAL ROOT PRIMORDIUM 1 | 1 | 300 | IPR007818 | GO:0003700|GO:0006355 | |
Bda08g01246 | 303 | TIGRFAM | put_zinc_LRP1: putative zinc finger domain, LRP1 type | 86 | 128 | IPR006510 | - | |
Bda08g01246 | 303 | MobiDBLite | consensus disorder prediction | 11 | 27 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bda01g00510 | Bda08g01246 | CCT | |
Bda03g00274 | Bda08g01246 | CCT | |
Bda01g00510 | Bda08g01246 | ECH | |
Bda03g00274 | Bda08g01246 | ECH | |
Bda01g01519 | Bda08g01246 | BCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda07g00763 | Bda-Chr7:9051685 | Bda08g01246 | Bda-Chr8:50963196 | 1.61E-47 | dispersed | |
Bda08g01246 | Bda-Chr8:50963196 | Bda10g00166 | Bda-Chr10:4910528 | 5.97E-80 | dispersed | |
Bda01g00510 | Bda-Chr1:32082199 | Bda08g01246 | Bda-Chr8:50963196 | 1.14E-128 | wgd | |
Bda01g01519 | Bda-Chr1:51050589 | Bda08g01246 | Bda-Chr8:50963196 | 2.19E-170 | wgd | |
Bda03g00274 | Bda-Chr3:2407882 | Bda08g01246 | Bda-Chr8:50963196 | 5.83E-121 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
16324 | PF05142 | DUF702 | 5.10E-64 | No_clan | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda08g01246 | - | - | jre:108991308 | 393.275 |