Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g01246 ATGGCTAGTTTTTTCTATCTAGGCGGTAGAGACCAAGATCCACGAAACAAGGAAAGCGAAGGAGAAGAAGAAGATCAGAGGGCGCAAAACCTATATTTATACAGACAAGAAGAGATCTACAACAAGGGCTTCGAGATATGGCCTCAGTACAATCAGCAAAACATGAGCAACTACTTGTCTTTCGGAGTGGGTCCGAGCCGAAGAAACTTCATGAATGTCTCTGAGCACACTTCATCAAGATCAGGAGGAGGGGTGAATTGCCAAGACTGTGGAAATCAAGCCAAGAAAGACTGTTCTTATTTGCGGTGTAGAACTTGTTGCAAAAGCAGAGGGTTTCAATGTCAAACCCATGTCAGAAGCACGTGGGTTCCGGCGGCTAAACGCCGGGAGAGGCAGCAGCAACTTGCGGCCTTTCATTGTCAACCGCCGGAAGAGCCACCACAGCCTCGTGCAGGAGAGAATACGAAAAAGATTAGGGAGCTTCAGGTGGGAGGTTCTTCTTCTCTTGCCGCCTCTCGTTTACCCACCATTACATCAGGGTTAGAGCTGACGCAGTTTCCAGCTGAAGTGAATTCCCCAGCCGTGTTTCGCTGCGTAAAAGTCAGCCCAGTATATGACGCAGATGAACAGTTTGCATATCAGACGGCTGTAAACATCGGCGGACATGTTTTCAAAGGAATTCTTTATGACCAAGGCCCAGAAAGTCGTTACGCCGGCGGGGGTGGTGAAGGCTCCTCCGTCCACGGCGCAGATGGAGCTCAGCAACTTAATCTTATTACAGGACCCTCCTGCACCATAGCCGCTGCAACTACTAGTAATCCTTCTGCTACAATGCTAGACCCTTCTCTATATCCAGCTCCCCTTACTGCATTCATAGCTGGTACGCAATTCTTCCCACCTTCAAGGCCATGA 912 49.12 MASFFYLGGRDQDPRNKESEGEEEDQRAQNLYLYRQEEIYNKGFEIWPQYNQQNMSNYLSFGVGPSRRNFMNVSEHTSSRSGGGVNCQDCGNQAKKDCSYLRCRTCCKSRGFQCQTHVRSTWVPAAKRRERQQQLAAFHCQPPEEPPQPRAGENTKKIRELQVGGSSSLAASRLPTITSGLELTQFPAEVNSPAVFRCVKVSPVYDADEQFAYQTAVNIGGHVFKGILYDQGPESRYAGGGGEGSSVHGADGAQQLNLITGPSCTIAAATTSNPSATMLDPSLYPAPLTAFIAGTQFFPPSRP 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 50963196 50964540 - Bda030251.1 Bda08g01246 12102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g01246 303 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 300 - -
Bda08g01246 303 Pfam Domain of unknown function (DUF702) 84 234 - -
Bda08g01246 303 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 185 233 IPR006511 -
Bda08g01246 303 MobiDBLite consensus disorder prediction 1 27 - -
Bda08g01246 303 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 300 IPR007818 GO:0003700|GO:0006355
Bda08g01246 303 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 86 128 IPR006510 -
Bda08g01246 303 MobiDBLite consensus disorder prediction 11 27 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g00510 Bda08g01246 CCT
Bda03g00274 Bda08g01246 CCT
Bda01g00510 Bda08g01246 ECH
Bda03g00274 Bda08g01246 ECH
Bda01g01519 Bda08g01246 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00763 Bda-Chr7:9051685 Bda08g01246 Bda-Chr8:50963196 1.61E-47 dispersed
Bda08g01246 Bda-Chr8:50963196 Bda10g00166 Bda-Chr10:4910528 5.97E-80 dispersed
Bda01g00510 Bda-Chr1:32082199 Bda08g01246 Bda-Chr8:50963196 1.14E-128 wgd
Bda01g01519 Bda-Chr1:51050589 Bda08g01246 Bda-Chr8:50963196 2.19E-170 wgd
Bda03g00274 Bda-Chr3:2407882 Bda08g01246 Bda-Chr8:50963196 5.83E-121 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16324 PF05142 DUF702 5.10E-64 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g01246 - - jre:108991308 393.275