Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g01253 ATGGTGTCTCTGCTTTCTCTTTCATCCTCAAGTTCGCCAAGGTGTTTCGATTATTCGTTATTTCTCAGTGGCGCATACACGAGGAGTGACTTTCCTATCCGTAGTATTTATCGTATCAGAAGGTTCTCTGAAAGCCATAGTTTCAACGCAATCAAATGTAGACTTGCAAAGCCCAAGGAGCCTCCTTCAAAAGCTGCTACATTTACAAAGGAACCTCACAAGTTTTTTGATCAGGCAATAATCACAGTTCGGTCAGGAGATGGAGGCCATGGGGCAATTCTCAGTTTGCCTAACCAACAATCGAGTAAGTCACGTGTTAAACATGCCATCGAGAAGACAAAGAGAAAGAGCTCGTACAAAAGGGATTTTGATGGGTCACTGATTCTTCCAAGTGGTGGGCGTGGTGGAGACGTTGTAATCTTTGCAGACGAGGGGAAAGATTCATTGCTGGAGTTTCATACGAAAAGTCGTCATAATGCAAAACGTGGTGGAAATGTTGATGCAATGGGTGTCTTGACTTCACAATTACATGACGGATTTAATGGTCCAACCCTTCGCATTCCTGTACCCTTAGGTACAGTTGTAAGACTAAAAAAGGGGAAATTATTGGCTGATCTAGAGCATCCAGGTGACGAAGTTGTTATTGCCAGAGGTGGACAAGGAGGGACTAGCCTGGTTGAAATGCCTGAGCATAGAAGGAAAAAGTTGATGGCTTTAACTGCAAATGTGATGAGGGATGAAAGTGACAAGGTTTTACTTATTGGTCAACCGGGGGAAGAAGTCAGTTTGGAGTTGATTCTCCGAGTTGTTGCTGATGTTGGTCTCGTCGGACTTCCAAATGCTGGGAAATCAACTCTTTTGGCAGCTATTACAAAAGCAAAACCTGATATTGCTGATTATCCTTTCACAACGTTAATGCCAAACCTTGGTCGCCTTGATGGGGATCCTACTCTTGGGGCTGAAATGTATTTATCAGAAGCAACATTAGCAGATTTGCCTGGCCTTATTGAAGGTGCTCACTTGGGAAAGGGTCTTGGTCGAAATTTCTTGAGGCACTTGAGAAGAACTCGACTCTTAGTCCTCGTTGTTGATGCTGCTGTTGGGAACCCCATAGAAGATTACAGAACTGTCAAAGAAGAGTTACGGATGTACAATCCTAATTACCTTGAACGACCATATATCGTGGTGTTAAACAAAATTGACCTTCCTGAGGCAAGAGAGAGACTTTCATTTTTGATAGAGGAGATAGCAAATATTGGAAGTGATACAGTAGCTTCTAAGTCAGAAATGAACTTTGAGGATACTGATCAATTGTCATCGTCAAAAGGTGGTCATTCAGATGTTGAAATAAAGAATAAAAACATCGAGGACTATCCCCGTCCACTTTCTGTTGTAGGAGTGAGTGTCCTGAAAGGTATGGGGTTGAATGAGATGTTGAAGGAGATAAGAGCAGCCTTAAGGAAGTGCAGGGATTAA 1476 42.68 MVSLLSLSSSSSPRCFDYSLFLSGAYTRSDFPIRSIYRIRRFSESHSFNAIKCRLAKPKEPPSKAATFTKEPHKFFDQAIITVRSGDGGHGAILSLPNQQSSKSRVKHAIEKTKRKSSYKRDFDGSLILPSGGRGGDVVIFADEGKDSLLEFHTKSRHNAKRGGNVDAMGVLTSQLHDGFNGPTLRIPVPLGTVVRLKKGKLLADLEHPGDEVVIARGGQGGTSLVEMPEHRRKKLMALTANVMRDESDKVLLIGQPGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITKAKPDIADYPFTTLMPNLGRLDGDPTLGAEMYLSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVLVVDAAVGNPIEDYRTVKEELRMYNPNYLERPYIVVLNKIDLPEARERLSFLIEEIANIGSDTVASKSEMNFEDTDQLSSSKGGHSDVEIKNKNIEDYPRPLSVVGVSVLKGMGLNEMLKEIRAALRKCRD 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 51170892 51175529 - Bda030260.1 Bda08g01253 12109

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g01253 491 Pfam GTP1/OBG 131 268 IPR006169 -
Bda08g01253 491 PANTHER GTP-BINDING PROTEIN OBGC2-RELATED 51 491 - -
Bda08g01253 491 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 272 486 IPR027417 -
Bda08g01253 491 TIGRFAM small_GTP: small GTP-binding protein domain 272 417 IPR005225 GO:0005525
Bda08g01253 491 SUPERFAMILY Obg GTP-binding protein N-terminal domain 74 235 IPR036726 -
Bda08g01253 491 PRINTS GTP1/OBG GTP-binding protein family signature 294 312 IPR006073 GO:0005525
Bda08g01253 491 PRINTS GTP1/OBG GTP-binding protein family signature 329 344 IPR006073 GO:0005525
Bda08g01253 491 PRINTS GTP1/OBG GTP-binding protein family signature 273 293 IPR006073 GO:0005525
Bda08g01253 491 PRINTS GTP1/OBG GTP-binding protein family signature 346 364 IPR006073 GO:0005525
Bda08g01253 491 PANTHER DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED 51 491 IPR045086 GO:0003924|GO:0005525
Bda08g01253 491 Gene3D GTP1/OBG domain 74 269 IPR036726 -
Bda08g01253 491 Gene3D - 270 491 IPR027417 -
Bda08g01253 491 ProSiteProfiles Obg domain profile. 73 270 IPR006169 -
Bda08g01253 491 ProSitePatterns GTP1/OBG family signature. 331 344 IPR006074 GO:0005525
Bda08g01253 491 CDD Obg 271 438 IPR031167 GO:0005525
Bda08g01253 491 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 271 487 IPR031167 GO:0005525
Bda08g01253 491 Pfam 50S ribosome-binding GTPase 272 399 IPR006073 GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g01253 - - - jre:108991389 669.463
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00586 Bda-Chr7:7190162 Bda08g01253 Bda-Chr8:51170892 5.71E-21 dispersed
Bda08g01253 Bda-Chr8:51170892 Bda13g00170 Bda-Chr13:2181892 5.91E-46 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1021 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00466 . Blo17g00770 . Bda08g01253 . . . . . . . . . . . . . . . . . . . . . Cla05g01905 Cam05g2042 Cec05g2050 Cco05g2105 Clacu05g2034 Cmu05g1913 Cre05g2035 . . . Cme04g00509
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011355 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g01253 Bda_Chr08 FPKM 0.665122 1.514506 0.477023 0.593607 0.118593 0.167667 0.155192 1.210374 1.846039