Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g01259 ATGGTTAGCCATGACTCCCCTCCGAACCCAGGTTCAAATATTTTCCACCAGTTCATAGTTTCAGACTCTGTTTCTTCCCAAACCCAGTTTGATCACCCACATTTTGATGCTTATGGCTCTGGCTTGAGAGGACACGACTCATTTCATCACCCAACTATTCAGTCACTAGGAGAAAGAATGTCTAGATCTATTGATCTTGTCCAAGCTCCTCCAATGGCGGAAGATTCTCATATCAGCCATACTGCACATCTTATGGACCTTCTTGGAGCAGCAAGTGAGGCTAGCCATCGAGTTCGTGGTCTCTCACTTTCTCTCAGCTCCCACATGGCCTTAAATTCCAATCTCATTACTCCAAATCACTTCGTATGTGGAGGAAACGGAAGAGAAACTGGCGATTTTGAAGCTAATGAGAATTATTCTTTGATGGATGGAGCTTTTGCTTCATCTTCAAACTCTATGCGTAGCCCCGCAGAGTTTTTCGGTTCAGTTCTTGGTAATTCAAGATACCTTAGACCGACTCAATCGCTACTCGAAGAAATCGTCAATGTTAATGGCAAAATTGTCGATCTAAACAATGAGTTTGATAGAGGTAGAAGAGGATCACTTGGTTTATCTGCAGATTTAAGAGCAGAATTATGCAGTAATCCTCCATTTTCGGCCGAGAAACAAGAAAACCAGCTTCTAATCGCGAAGCTTATCGACTTATTGGAGGAGGTCGAGGGTCGATTCGAGAAGTACTGTCATCAAATGGAAGGAATTGTACATTCATTTGAAGCTATAGCTGGTTATGGAGCAGCTAAATCTTACACTGCTCTTGCACTTCAAGCAATGTCTAGGCATTTCTTCAGCCTAAGAAGTGCTATAGTTTCTCAGATAAATCTCGAAAAAAGAAGACTTCTTCGAGGCTTACCGAAAATCAGTGCCGGTTTATGGCAGCTTAGCTTGTTCGATAGAGAAAACCGGAGCAACCGAATGGCTCTTCAGCAGCTCGGAATGATTCATGGCCAAAGGCAAGCATGGAGGCCAATCAGAGGCTTACCGGAGACCTCTGTCACGATACTCCGGTCCTGGCTTTTCGAGCATTTTCTCCACCCCTACCCAAATGATTCGGAAAAGCTAATGTTGTCTTCTCAAACTGGCCTGACCAAGAATCAAGTTTCGAATTGGTTTATAAATGCCCGGGTTCGACTATGGAAGCCGATGATAGAGGAGATGTACAAAGAAGAATTTGGAGACTCTTCAGAAGACTCCAATCCATTGGCTGGTGGTTCCAATGCAGGAGAAAGTTTTACAGATTATGCAGAGGATTGA 1311 43.63 MVSHDSPPNPGSNIFHQFIVSDSVSSQTQFDHPHFDAYGSGLRGHDSFHHPTIQSLGERMSRSIDLVQAPPMAEDSHISHTAHLMDLLGAASEASHRVRGLSLSLSSHMALNSNLITPNHFVCGGNGRETGDFEANENYSLMDGAFASSSNSMRSPAEFFGSVLGNSRYLRPTQSLLEEIVNVNGKIVDLNNEFDRGRRGSLGLSADLRAELCSNPPFSAEKQENQLLIAKLIDLLEEVEGRFEKYCHQMEGIVHSFEAIAGYGAAKSYTALALQAMSRHFFSLRSAIVSQINLEKRRLLRGLPKISAGLWQLSLFDRENRSNRMALQQLGMIHGQRQAWRPIRGLPETSVTILRSWLFEHFLHPYPNDSEKLMLSSQTGLTKNQVSNWFINARVRLWKPMIEEMYKEEFGDSSEDSNPLAGGSNAGESFTDYAED 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 51315713 51317270 - Bda030271.1 Bda08g01259 12115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g01259 436 SMART HOX_1 340 404 IPR001356 GO:0003677
Bda08g01259 436 Gene3D - 336 415 - -
Bda08g01259 436 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 2 418 - -
Bda08g01259 436 Pfam Associated with HOX 163 288 IPR006563 -
Bda08g01259 436 SUPERFAMILY Homeodomain-like 346 408 IPR009057 -
Bda08g01259 436 Pfam Homeobox KN domain 357 396 IPR008422 GO:0003677|GO:0006355
Bda08g01259 436 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 11 2 418 - -
Bda08g01259 436 ProSiteProfiles 'Homeobox' domain profile. 337 400 IPR001356 GO:0003677
Bda08g01259 436 SMART prehox3 160 290 IPR006563 -
Bda08g01259 436 MobiDBLite consensus disorder prediction 409 436 - -
Bda08g01259 436 CDD homeodomain 340 401 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01513 Bda-Chr1:50968677 Bda08g01259 Bda-Chr8:51315713 0 dispersed
Bda08g01259 Bda-Chr8:51315713 Bda03g00660 Bda-Chr3:5622800 1.50E-68 dispersed
Bda01g00515 Bda-Chr1:32123874 Bda08g01259 Bda-Chr8:51315713 2.68E-75 wgd
Bda03g00272 Bda-Chr3:2397758 Bda08g01259 Bda-Chr8:51315713 5.60E-74 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16327 PF07526 POX 1.70E-34 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g01259 - - vvi:100252354 533.487