Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda08g01259 | ATGGTTAGCCATGACTCCCCTCCGAACCCAGGTTCAAATATTTTCCACCAGTTCATAGTTTCAGACTCTGTTTCTTCCCAAACCCAGTTTGATCACCCACATTTTGATGCTTATGGCTCTGGCTTGAGAGGACACGACTCATTTCATCACCCAACTATTCAGTCACTAGGAGAAAGAATGTCTAGATCTATTGATCTTGTCCAAGCTCCTCCAATGGCGGAAGATTCTCATATCAGCCATACTGCACATCTTATGGACCTTCTTGGAGCAGCAAGTGAGGCTAGCCATCGAGTTCGTGGTCTCTCACTTTCTCTCAGCTCCCACATGGCCTTAAATTCCAATCTCATTACTCCAAATCACTTCGTATGTGGAGGAAACGGAAGAGAAACTGGCGATTTTGAAGCTAATGAGAATTATTCTTTGATGGATGGAGCTTTTGCTTCATCTTCAAACTCTATGCGTAGCCCCGCAGAGTTTTTCGGTTCAGTTCTTGGTAATTCAAGATACCTTAGACCGACTCAATCGCTACTCGAAGAAATCGTCAATGTTAATGGCAAAATTGTCGATCTAAACAATGAGTTTGATAGAGGTAGAAGAGGATCACTTGGTTTATCTGCAGATTTAAGAGCAGAATTATGCAGTAATCCTCCATTTTCGGCCGAGAAACAAGAAAACCAGCTTCTAATCGCGAAGCTTATCGACTTATTGGAGGAGGTCGAGGGTCGATTCGAGAAGTACTGTCATCAAATGGAAGGAATTGTACATTCATTTGAAGCTATAGCTGGTTATGGAGCAGCTAAATCTTACACTGCTCTTGCACTTCAAGCAATGTCTAGGCATTTCTTCAGCCTAAGAAGTGCTATAGTTTCTCAGATAAATCTCGAAAAAAGAAGACTTCTTCGAGGCTTACCGAAAATCAGTGCCGGTTTATGGCAGCTTAGCTTGTTCGATAGAGAAAACCGGAGCAACCGAATGGCTCTTCAGCAGCTCGGAATGATTCATGGCCAAAGGCAAGCATGGAGGCCAATCAGAGGCTTACCGGAGACCTCTGTCACGATACTCCGGTCCTGGCTTTTCGAGCATTTTCTCCACCCCTACCCAAATGATTCGGAAAAGCTAATGTTGTCTTCTCAAACTGGCCTGACCAAGAATCAAGTTTCGAATTGGTTTATAAATGCCCGGGTTCGACTATGGAAGCCGATGATAGAGGAGATGTACAAAGAAGAATTTGGAGACTCTTCAGAAGACTCCAATCCATTGGCTGGTGGTTCCAATGCAGGAGAAAGTTTTACAGATTATGCAGAGGATTGA | 1311 | 43.63 | MVSHDSPPNPGSNIFHQFIVSDSVSSQTQFDHPHFDAYGSGLRGHDSFHHPTIQSLGERMSRSIDLVQAPPMAEDSHISHTAHLMDLLGAASEASHRVRGLSLSLSSHMALNSNLITPNHFVCGGNGRETGDFEANENYSLMDGAFASSSNSMRSPAEFFGSVLGNSRYLRPTQSLLEEIVNVNGKIVDLNNEFDRGRRGSLGLSADLRAELCSNPPFSAEKQENQLLIAKLIDLLEEVEGRFEKYCHQMEGIVHSFEAIAGYGAAKSYTALALQAMSRHFFSLRSAIVSQINLEKRRLLRGLPKISAGLWQLSLFDRENRSNRMALQQLGMIHGQRQAWRPIRGLPETSVTILRSWLFEHFLHPYPNDSEKLMLSSQTGLTKNQVSNWFINARVRLWKPMIEEMYKEEFGDSSEDSNPLAGGSNAGESFTDYAED | 436 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 51315713 | 51317270 | - | Bda030271.1 | Bda08g01259 | 12115 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda08g01259 | 436 | SMART | HOX_1 | 340 | 404 | IPR001356 | GO:0003677 | |
Bda08g01259 | 436 | Gene3D | - | 336 | 415 | - | - | |
Bda08g01259 | 436 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 2 | 418 | - | - | |
Bda08g01259 | 436 | Pfam | Associated with HOX | 163 | 288 | IPR006563 | - | |
Bda08g01259 | 436 | SUPERFAMILY | Homeodomain-like | 346 | 408 | IPR009057 | - | |
Bda08g01259 | 436 | Pfam | Homeobox KN domain | 357 | 396 | IPR008422 | GO:0003677|GO:0006355 | |
Bda08g01259 | 436 | PANTHER | BEL1-LIKE HOMEODOMAIN PROTEIN 11 | 2 | 418 | - | - | |
Bda08g01259 | 436 | ProSiteProfiles | 'Homeobox' domain profile. | 337 | 400 | IPR001356 | GO:0003677 | |
Bda08g01259 | 436 | SMART | prehox3 | 160 | 290 | IPR006563 | - | |
Bda08g01259 | 436 | MobiDBLite | consensus disorder prediction | 409 | 436 | - | - | |
Bda08g01259 | 436 | CDD | homeodomain | 340 | 401 | IPR001356 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda01g01513 | Bda-Chr1:50968677 | Bda08g01259 | Bda-Chr8:51315713 | 0 | dispersed | |
Bda08g01259 | Bda-Chr8:51315713 | Bda03g00660 | Bda-Chr3:5622800 | 1.50E-68 | dispersed | |
Bda01g00515 | Bda-Chr1:32123874 | Bda08g01259 | Bda-Chr8:51315713 | 2.68E-75 | wgd | |
Bda03g00272 | Bda-Chr3:2397758 | Bda08g01259 | Bda-Chr8:51315713 | 5.60E-74 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
16327 | PF07526 | POX | 1.70E-34 | No_clan | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda08g01259 | - | - | vvi:100252354 | 533.487 |