Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g01275 ATGACAGGATGGATGTATTTCGTGTCCAAGACATTAGCTGAGCAAGCTGCGTGGAAATTTGCTGAAGAACAAAACCTAGATTTCATAAGCATCATACCCACCCTCGTCATCGGCCCATTTCTCATGCCATCAATGCCGCCTAGCTTGATTACTGGACTTTCCCTAATTACCAGAACTGAAAGCCATTATTCTATAACCAAGCAATGCCAATATGTTCATCTGGACGACCTTTGCAATGCTCATATATTCTTGTATGAGAACCCTAGAGCCGAGGGGAGATATATTTGTTCCTCTCACAATGCTAATATCCATGACATCGCAAATCTGCTTAAAGAAAAATACCCAGAATACAATGTTCCGACCCGGTTCGAAGGAATTGAAGAGAACTTGAATATAATTGAATTCTCTTCAAAAAAGTTGACAGATTTAGGGTTTGAGTTCAAATACAGCTTGGAGGAGATGTTCACCGGTGCAGTTGAAACATGTCGGGCCAAAGGGTTGATCCCTCATGCTTCTCCAATCCATGTCAGCGGCAATGGAAACGTCTAG 549 42.26 MTGWMYFVSKTLAEQAAWKFAEEQNLDFISIIPTLVIGPFLMPSMPPSLITGLSLITRTESHYSITKQCQYVHLDDLCNAHIFLYENPRAEGRYICSSHNANIHDIANLLKEKYPEYNVPTRFEGIEENLNIIEFSSKKLTDLGFEFKYSLEEMFTGAVETCRAKGLIPHASPIHVSGNGNV 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 51916680 51917522 + Bda030293.1 Bda08g01275 12131

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g01275 182 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 165 IPR036291 -
Bda08g01275 182 Pfam NAD dependent epimerase/dehydratase family 3 91 IPR001509 -
Bda08g01275 182 Gene3D - 1 179 - -
Bda08g01275 182 PANTHER DIHYDROFLAVONOL 4-REDUCTASE 3 172 - -
Bda08g01275 182 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 3 172 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g01275 K13082 DFR; bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase [EC:1.1.1.219 1.1.1.234] - zju:107420293 287.73
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01499 Bda-Chr1:50882808 Bda08g01275 Bda-Chr8:51916680 7.72E-110 dispersed
Bda08g01275 Bda-Chr8:51916680 Bda02g00572 Bda-Chr2:46529731 1.35E-47 dispersed
Bda08g01271 Bda-Chr8:51845930 Bda08g01275 Bda-Chr8:51916680 3.00E-136 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g974 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo18g00809 Bda08g01275 . . Bpe05g00102 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001471 4 1 2 1 2 2 1 2 2 1 1 2 2 1 2 2 2 4 2 2 2 4 3 2 2 1 6 4 4 6 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g01275 Bda_Chr08 FPKM 24.734554 26.917603 17.446381 16.135799 22.250694 23.409662 23.325394 12.604267 13.428693