Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g01276 ATGGGCGCGGAATCTTTCCCTAAGAATGGCTCCGATGCCCCTCTCGTTCTCGGCCTCCAACCCTCTGCGCTCATTGACCACGTTGCTTGCGTCGATTGGTCCCTCCTTGATCAAATCCCCGGTGACCGCGGCGGTTCTGTTCCGGTTGCTAAGGAGGAACTTGAACGTATTTTAATGGAGGTGAAAACTCATGCACTATCCTCCCCCGATAATTCATCTCTTATGATGACAATGGCTGGGGGAAGTGTTGCCAATACAATTAGAGGGCTGAGTGCTGGTTTTGGAGTCAGCTGTGGTTTAATTGGGGTCCGAGGGAATGATGATCAAGGCAACTTGTTTGCTAGAAACATGAGCTCTAATGGAGTAAATCTCTCCAGGTTAAGATTGAAAACAGGTTCCACAGCTCAGTGTGTTTGCTTGGTTGATGCTTTGGGAAATCGCACAATGCGTCCATGTCTCTCCAGTGCTGTTAAAATCCAGGCACACTATGATTTGACTAGAGAGGATCTTAAAGGTTCTAAGTGGTTGATCATGAGATTTGGAAAAATTAACTTGGAAGTGATTCAAGCTGCCATACGAATCGCCAAACAGGAGAATGTTTCTGTGTCTTTGGATTTGGCGAGTTTTGAGATGGTTCGAGACTTCAGATTATCTCTCCTTCAATTATTGGAGTCGGGTGATATCGACCTTTGCTTCGCCAATGAGGATGAGGCGAAAGAGTTGTTAAGTTGTGAACAGAATGCAGATCCTGAGGTTGCATTAGAATTTCTGGCAAAACACTGCCAATGGGCCGTGGTGACACTAGGGCCCAATGGATGCATAGCAAAGCATGGAAAAGAGATTGTCAGAGTTCCGGCCATAGGGGGAGGAAAGCCAAGAGATGCAACCGGAGCAGGAGACTTGTTTGCAAGTGGGTTTATATATGGATTACTGAAGGGATTATGTCTAGAGAAGTGCTGCCAAATAGGTTCGTGCAGTGGAGGGTCTGTTATTCGCTCCCTGGGCGGGGAGGTGACTCCCGAGAATTGGCAGTGGATGCATAAGCAAATGCAGATGAAGGGCCTTCTTCTTCCTGATGACTGTAAA 1086 47.15 MGAESFPKNGSDAPLVLGLQPSALIDHVACVDWSLLDQIPGDRGGSVPVAKEELERILMEVKTHALSSPDNSSLMMTMAGGSVANTIRGLSAGFGVSCGLIGVRGNDDQGNLFARNMSSNGVNLSRLRLKTGSTAQCVCLVDALGNRTMRPCLSSAVKIQAHYDLTREDLKGSKWLIMRFGKINLEVIQAAIRIAKQENVSVSLDLASFEMVRDFRLSLLQLLESGDIDLCFANEDEAKELLSCEQNADPEVALEFLAKHCQWAVVTLGPNGCIAKHGKEIVRVPAIGGGKPRDATGAGDLFASGFIYGLLKGLCLEKCCQIGSCSGGSVIRSLGGEVTPENWQWMHKQMQMKGLLLPDDCK 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 51935280 51937841 - Bda034047 Bda08g01276 12132

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g01276 362 SUPERFAMILY Ribokinase-like 22 336 IPR029056 -
Bda08g01276 362 Pfam pfkB family carbohydrate kinase 79 336 IPR011611 -
Bda08g01276 362 CDD adenosine_kinase 16 335 - -
Bda08g01276 362 PANTHER SUGAR KINASE 12 353 - -
Bda08g01276 362 PANTHER CARBOHYDRATE KINASE-LIKE 12 353 - -
Bda08g01276 362 Gene3D - 19 339 IPR029056 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g01276 - - - pper:18789808 549.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g01276 Bda-Chr8:51935280 Bda14g00069 Bda-Chr14:540456 1.90E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g967 . . . . . . . . Cmo05g00262 Cmo12g00406 . . . Car12g00431 . . Cpe07g00408 Bhi04g00190 . . . Hepe10g0623 . . Cla08g01471 Cam08g1959 Cec08g1534 Cco08g1672 Clacu08g1649 . Cre08g1434 Cone4ag1920 Cone7ag1832 . . . . . Cme03g01937 Blo17g00786 . Bda08g01276 . . Bpe05g00101 . Bma05g00129 . . . Cma12g00456 Cma05g00257 Car05g00214 . Cpe11g00212 . . . . . . . . . . . . . . . Lsi08g01381 Csa02g02070 Chy03g01442 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006701 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 1 3 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g01276 Bda_Chr08 FPKM 53.278938 61.110168 6.301861 6.122514 11.898128 12.755187 11.220366 0.303544 0.28247