Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g01279 ATGAGAGAAATGGAGGCGATGGACATTAAACCGACACCTGAAATTTACATGGCACTGCTCAGATCATTTTGGCAGAGTGGTGATTTTGCTGGGTCTGAAAAAATCACCAGCATTATGCAGTTTGCTGGGATCCAGCCGAGTCTGGAATCATGTACTTTACTTGTTGAGGCATATGCACAAGCTGGTAAGCCTGCTGAAGCAAGAAACAACTTTGACTACATGGTAAAAATTGGACATAGGCCCGATGATAGGATTACTGCAAGTATGATTGCGGCATATGAGAAGAATAATCTATTGGATAAGGCACTAAATCTTTTGCTGCAGCTGGAAAAGGATGGCTTTGAGCCTGGGGTTGAAACTTACACTGTTCTTGTAGATTGA 381 42.52 MREMEAMDIKPTPEIYMALLRSFWQSGDFAGSEKITSIMQFAGIQPSLESCTLLVEAYAQAGKPAEARNNFDYMVKIGHRPDDRITASMIAAYEKNNLLDKALNLLLQLEKDGFEPGVETYTVLVD 126
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 52035919 52036299 - Bda030296.1 Bda08g01279 12135

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g01279 126 Pfam PPR repeat 88 114 IPR002885 -
Bda08g01279 126 Pfam Pentatricopeptide repeat domain 38 81 IPR002885 -
Bda08g01279 126 TIGRFAM PPR: pentatricopeptide repeat domain 88 117 IPR002885 -
Bda08g01279 126 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 82 116 IPR002885 -
Bda08g01279 126 Gene3D Tetratricopeptide repeat domain 1 126 IPR011990 GO:0005515
Bda08g01279 126 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 5, MITOCHONDRIAL 1 126 - -
Bda08g01279 126 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 47 81 IPR002885 -
Bda08g01279 126 PANTHER OS07G0661900 PROTEIN 1 126 IPR044657 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g01279 - - - vvi:100267767 198.364
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g01279 Bda-Chr8:52035919 Bda06g00236 Bda-Chr6:4157060 4.37E-06 dispersed
Bda08g01279 Bda-Chr8:52035919 Bda08g00623 Bda-Chr8:6386900 3.48E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g957 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1917 Cone7ag1828 . . . . . . Blo17g00795 . Bda08g01279 . . Bpe05g00093 . . . . . . . . . Cpe11g00210 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0021358 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 2
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g01279 Bda_Chr08 FPKM 0.0 0.0 1.007539 2.578321 0.0 1.217989 1.536031 9.295062 7.193172