Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g01280 ATGCCGAACGGAGAAGACGGAACCCTAGAAGCTTTGAAATGCGCTGCTTGCGAATGCCACAGAAATTTCCACCGAAAAGAAGTAGACGGCGAGCGCCAATTGATGAGTCCAAGCTCGAGAAGAACCATAGTCCTCAATCACCTCCAGCTTCCGCCGCCATTGCCGTCGCCCCACCACCATAAATTCTCAATAGGAGGCCTGAATTTCCACTCAAGCCCTACCGCTCCTATCGTCGCGCCTATGAACGTCGCTTTCGGCGCAAACGAGTCATCAAGCGAAGATCTTAACGTGTTTCAGTCCAACGCAGATGCAACTACATACCCGCCATTTTCTCTCTCGAAGAAAAGGTTCAGAACGAAGTTCACTCAAGAACAGAAGAACAAAATGCTGGAATTCGCAGAGAAAGTGGGGTGGAGAATGCAAAAGCAAGACGAACAAGAAGTAGACAAGTTTTGCGCTGAAGTTGGAGTAAAGAGACAAGTTCTAAAGGTATGGATGCACAACAACAAGACGAGCACCATTAAAAAGCAAAACGAGAATCATGATCAAATCTTGGACATAACCGGAGCAGATGATGAAATGATTGACTCGGAAAAGCTAGAATAG 606 46.7 MPNGEDGTLEALKCAACECHRNFHRKEVDGERQLMSPSSRRTIVLNHLQLPPPLPSPHHHKFSIGGLNFHSSPTAPIVAPMNVAFGANESSSEDLNVFQSNADATTYPPFSLSKKRFRTKFTQEQKNKMLEFAEKVGWRMQKQDEQEVDKFCAEVGVKRQVLKVWMHNNKTSTIKKQNENHDQILDITGADDEMIDSEKLE 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 52070127 52070732 - Bda030299.1 Bda08g01280 12136

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g01280 201 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 7 1 175 - -
Bda08g01280 201 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 1 27 IPR006456 -
Bda08g01280 201 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 1 175 - -
Bda08g01280 201 SUPERFAMILY Homeodomain-like 107 172 IPR009057 -
Bda08g01280 201 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 114 170 IPR006455 -
Bda08g01280 201 Pfam ZF-HD protein dimerisation region 1 28 IPR006456 -
Bda08g01280 201 Gene3D - 100 175 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g01280 - - - csv:101216040 283.878
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g01497 Bda08g01280 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g01280 Bda-Chr8:52070127 Bda11g01865 Bda-Chr11:53736302 2.02E-52 dispersed
Bda01g01497 Bda-Chr1:50842309 Bda08g01280 Bda-Chr8:52070127 4.05E-113 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g953 . . . . . . . . Cmo05g00254 Cmo12g00418 . . . . . . . Bhi04g00174 . . . Hepe10g0633 . . Cla08g01483 Cam08g1972 Cec08g1547 Cco08g1684 Clacu08g1662 . Cre08g1446 Cone4ag1915 Cone7ag1827 Cone17ag1347 Cone20ag0136 . . . Cme03g01952 Blo17g00796 Blo18g00811 Bda08g01280 Bda01g01497 Bpe02g01693 . Bma01g00760 Bma05g00124 . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01390 Csa02g02058 Chy03g01454 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005524 2 1 2 2 2 1 2 1 1 1 1 1 1 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16328 PF04770 ZF-HD_dimer 2.90E-12 No_clan Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g01280 Bda_Chr08 FPKM 0.736965 0.992692 1.248096 1.08626 0.438465 0.55074 0.581929 16.874077 17.043291