Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g01283 ATGGCGATGGGCAGCTCAGGATCAGCCTGGTCGTCAAAGCAGAACAAATTGTTTGAGAATGCTTTGGTGATGTACAATAAGGACACTCCAGATCGCTGGCATGATCTAGCCCGAGCTGTCGGCGGAAAAACAGTGGATGAAGTGAAGAGACACTATGAGATGCTTGTTGAAGATGTTCATAAGATTGAGACTGGTGAAGTTCCCTTACCTAACTACAGAAAAAATGGCATTCTTCTTGAGGGTTTAACTTCATGGAAGGAGAACAAAGTCTTCAAAACGAAGAGTATGGTAATTTTTTCCAGCAACTCAAATTCGTGGTGGGGATTGAATTTGACAGTGAATTTTAATTCAGATGCATGCTGTTGTGAAGTATGTGCGTATTTAAGGTTAAATTCTAACGTTCTCCCTTGTGCAGATAATTTTGGGACTGCAGATATTGATGAGAAAAGCATCCGAAAGGAAAATCCAGAAGAGCTGGTGTTGGCTCTTGCGGAAGCAAAGGCTGATGCTATCTTGTCAAAATTGCAATCAATCAGTAGTATGGAAAGGGTAGCTCAAACAACAATTTTGATTGCTGCTGATACAGCGGAAGCTATCATACAAAGGATTTATATTGATGACCTTGTAAAAGATTCAGAGCCAACATTACTGATAACTTCTGACCAAGTGGTGGTTCATGAAGGTGTCATTAGAGAAAAGCCATCCAGCAAGGAGGAAGCAAGACAGTTCTTGAAAGACTATTCGGGTGGGCATGCCGCAACTATAGGATCGGTGTTCGTCACAAACCTTAAGACAGGTTTCAGGAAAGGAGAATTTGACCGTGTTGAGATCTATTTCCATGAAATTCCAGATGATGTAATCGAGAAACTGGTTGATGAGGGGATTGTACTCAATGTAGCTGGGGGACTGATAATAGAACATCCTCTAGTTCTGCCTTGCATTAAAAAAGTGGAAGGGACGACGGATAGCGTGATGGGATTACCCAAATCTCTGACCGAGAAACTTTTGAGGGAGGCCCTTTAA 1023 42.03 MAMGSSGSAWSSKQNKLFENALVMYNKDTPDRWHDLARAVGGKTVDEVKRHYEMLVEDVHKIETGEVPLPNYRKNGILLEGLTSWKENKVFKTKSMVIFSSNSNSWWGLNLTVNFNSDACCCEVCAYLRLNSNVLPCADNFGTADIDEKSIRKENPEELVLALAEAKADAILSKLQSISSMERVAQTTILIAADTAEAIIQRIYIDDLVKDSEPTLLITSDQVVVHEGVIREKPSSKEEARQFLKDYSGGHAATIGSVFVTNLKTGFRKGEFDRVEIYFHEIPDDVIEKLVDEGIVLNVAGGLIIEHPLVLPCIKKVEGTTDSVMGLPKSLTEKLLREAL 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 52102367 52107815 - Bda030302.3 Bda08g01283 12139

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g01283 340 CDD SANT 9 56 IPR001005 -
Bda08g01283 340 ProSiteProfiles SANT domain profile. 5 60 IPR017884 -
Bda08g01283 340 Pfam Maf-like protein 143 338 IPR003697 GO:0047429
Bda08g01283 340 Gene3D - 7 60 - -
Bda08g01283 340 Gene3D - 137 339 IPR029001 -
Bda08g01283 340 PANTHER MAF-LIKE PROTEIN 196 339 - -
Bda08g01283 340 PANTHER MAF-LIKE PROTEIN 143 196 - -
Bda08g01283 340 PANTHER BIFUNCTIONAL DTTP/UTP PYROPHOSPHATASE/METHYLTRANSFERASE PROTEIN-RELATED 196 339 IPR003697 GO:0047429
Bda08g01283 340 PANTHER BIFUNCTIONAL DTTP/UTP PYROPHOSPHATASE/METHYLTRANSFERASE PROTEIN-RELATED 143 196 IPR003697 GO:0047429
Bda08g01283 340 SUPERFAMILY Homeodomain-like 8 63 IPR009057 -
Bda08g01283 340 SUPERFAMILY ITPase-like 143 338 IPR029001 -
Bda08g01283 340 SMART sant 6 58 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g01283 - - - var:108338050 310.457
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g00528 Bda08g01283 CCT
Bda08g01283 Bda14g00555 CCT
Bda08g01283 Bda15g00005 CCT
Bda01g00528 Bda08g01283 ECH
Bda08g01283 Bda14g00555 ECH
Bda08g01283 Bda15g00005 ECH
Bda01g01494 Bda08g01283 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00933 Bda-Chr6:25196546 Bda08g01283 Bda-Chr8:52102367 1.27E-25 dispersed
Bda08g01283 Bda-Chr8:52102367 Bda06g00938 Bda-Chr6:25525637 1.41E-26 dispersed
Bda15g00005 Bda-Chr15:1096822 Bda08g01283 Bda-Chr8:52102367 1.11E-27 dispersed
Bda15g00009 Bda-Chr15:1151701 Bda08g01283 Bda-Chr8:52102367 8.54E-28 dispersed
Bda11g01867 Bda-Chr11:53744388 Bda08g01283 Bda-Chr8:52102367 9.43E-56 transposed
Bda01g00526 Bda-Chr1:32258495 Bda08g01283 Bda-Chr8:52102367 1.63E-25 wgd
Bda01g01494 Bda-Chr1:50826229 Bda08g01283 Bda-Chr8:52102367 8.58E-44 wgd
Bda14g00555 Bda-Chr14:4067071 Bda08g01283 Bda-Chr8:52102367 1.63E-25 wgd
Bda03g00262 Bda-Chr3:2333331 Bda08g01283 Bda-Chr8:52102367 2.17E-26 wgd
Bda08g00931 Bda-Chr8:17151720 Bda08g01283 Bda-Chr8:52102367 9.50E-28 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g598 . . . Bda08g01283 . Bpe12g00081 . Bma12g00518 Cmo19g00682 . . Cma20g00850 Car02g00260 . . Cpe04g00118 Cpe15g00545 Bhi05g01235 Tan02g0794 . . Hepe02g0503 . . Cla02g00516 Cam02g0528 Cec02g0530 Cco02g0538 Clacu02g0529 Cmu02g0523 . . . Cone3ag1164 Cone10ag0959 Lsi10g00367 . Chy11g00379 Cme01g01409 Blo04g00513 Blo13g00552 Bda15g00005 Bda14g00555 Bpe15g00865 . Bma03g00553 . Sed01g0302 Cmo02g00403 Cmo20g00859 . Cma19g00672 . Car19g00513 . . Bhi10g02012 Tan05g1311 Cmetu11g2150 . Hepe08g1017 . . . . . . . . . Lsi11g01107 Csa02g01255 Chy01g00780 .
Vvi18g948 Blo01g01563 . Bda01g00528 . Bpe02g00390 . . Bma01g02321 . . Cma01g01911 Cma09g00157 Car01g01492 . Sed05g2314 Cpe06g00112 . Bhi04g00244 Tan02g0788 Cmetu01g0968 . Hepe02g0493 . Lcy13g1988 . . . . . . . Cone4ag1912 . Cone17ag1343 Cone20ag0138 Lsi04g01666 Csa03g04211 Chy04g00508 . Blo17g00801 Blo18g00814 Bda08g01283 Bda01g01494 Bpe02g01690 Bpe05g00091 Bma01g00763 . . Cmo01g01973 Cmo09g00156 . . . Car09g00139 . Cpe02g00126 . . . . . . . Cla05g01939 Cam05g2083 Cec05g2096 Cco05g2147 Clacu05g2079 Cmu05g1953 Cre05g2074 . . . Cme04g00564
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001845 2 11 1 1 1 2 3 1 1 1 1 2 2 2 2 3 2 2 3 2 2 1 2 2 2 1 2 8 1 2 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g01283 Bda_Chr08 FPKM 0.394495 0.0 0.0 0.0 0.0 0.341931 0.0 0.0 0.185066