Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g01288 ATGTCCTACTTCTCGTTCCCTGCTAGACTCACCCTTTTAGCCGTTCTCTCTGCTTCAACATTTTACTGCTTGTATAAATCACGTCGTCTTAGAAACCTTAAGTTTTCCTTGAAACCCATTTGTGACAAAGGCACTGGTCTTCTTCATAGTCGGCCTAAGCTTTTCTACTTATCCCAAACTGGTACCTCTAAAGCCCTAGCTCATCGCCTCCTCGAACTTTTGTCCGCGAATGGTATTGCATTTGACATCATCGACCCGAAAAACTACGAGCCGGAAGATCTCCCAAAAGAGAGCTTTGTTTTGTTTGTTGCTTCGACCTGGGAAGATGGAAAACCGCCTCCCAGCTCTCAATTCTTCGCGAATTGGCTTGCTGAAAGCTCTGAAGATTTCAGGGTTGGCTCGTTGTTGCTTTCTAAATGTAAGTTTGCGGTGTTTGGAGTTGGAAGCCGAGCTTATGGGGTTAGTTTCAATGCCGTGGCGAAGGATCTCTCTAAACAGATGAGGGCATTGGGTGCAAATGAGATATTGCCTGTTTGTGAAGGGGATGTTGATAGGGGGGACGTAAATGATGTTTTTGATTCTTGGAGCAGAAAAATTGTGGGCATTTTGAGGAGTGCTGCCGTGGAGAATGGTGAATGTGTGGATTCAGGAATGGCTAGTGAGAGTGATTGGGAAAGTGATGATAATAATGATGATGAGGTGGCGTCAGAGATTGTTGATCTTGAGGATGTTGCTGGTAAAGTTCCTTCCAGGAATTCAACAAAAATGGCTGAAACTAACGGGATAGTTAATGGTAAGAAAGAGATGGTTACCCCAGTGATCAGAGCAAGCTTAGAAAAGCAGGGCTATAAAATTATAGGCTCTCATAGTGGCGTGAAAATATGTAGATGGACAAAGTCACAGCTTCGAGGCCGTGGAGGTTGCTATAAGCACTCATTTTATGGAATAGAGAGTCACAGGTGTGTGGAGGCAACTCCTAGTTTGGCCTGTGCAAACAAATGTGTGTTTTGCTGGAGGCATCATACAAATCCAGTTGGAAAGAGCTGGCAGTGGAAAATGGATGATCCAGTGCAGATAGTGAATACTGCTATAGATCTACATACAAAGATGATTAAACAAATGAAAGGAGTTCCAGGTGTTACATTGGAGAGATTGACGGAAGGGCTCTCTCCCAGGCACTGTGCATTATCACTGGTTGGTGAACCTATTATGTATCCTGAGATCAACACACTCGTAGATGAACTACACCGAAGACGGATATCAACCTTTCTAGTAACAAATGCTCAATTTCCAGACAAGATAAACTCGTTGAAGCCTGTTACCCAGTTGTATGTAAGTGTTGACGCTGCAACAAAGGAGAGCCTCAAGGCAATTGATAGGCCACTTTTTGGGGACTTCTGGGAGCGATTCATTGATTCCTTGAAAGCTCTGAAAGACAAACAGCAGCGGACAGTTTATCGACTCACACTAGTGAAAGGGTGGAATACTGAAGATTTGGATGCATATTCAAACCTTTTCACTATTGGCCAACCCGATTTTGTTGAGATTAAGGGTGTTACATATTGTGGAAACTCTGCTACGTCGAAGTTAACCATGGAAAACGTTCCATGGCATGCGGACGTGAAGGCATTTTCTGAGGCTTTGGCTGTGAGAAGTAATGGGGAGTATGAAGCTGCATGTGAGCATGTCCACTCATGTTGTGTTCTTTTGGCCAAAACTACCAAATTTAAGGTTAAGGATCAGTGGTTCACATGGATAGACTATGAGAAGTTCCATGACTTGGTTGTTTCTGGAAAACCTTTTGACAGCAAGGATTACATGGCTCCTACCCCATCATGGGCCGTTTATGGAGGAGCAGAGGGCGGATTTGATCCAGATCAGGCTCGATATAGGAAGGAGCGGCATCATAAATCAAATTGA 1920 43.96 MSYFSFPARLTLLAVLSASTFYCLYKSRRLRNLKFSLKPICDKGTGLLHSRPKLFYLSQTGTSKALAHRLLELLSANGIAFDIIDPKNYEPEDLPKESFVLFVASTWEDGKPPPSSQFFANWLAESSEDFRVGSLLLSKCKFAVFGVGSRAYGVSFNAVAKDLSKQMRALGANEILPVCEGDVDRGDVNDVFDSWSRKIVGILRSAAVENGECVDSGMASESDWESDDNNDDEVASEIVDLEDVAGKVPSRNSTKMAETNGIVNGKKEMVTPVIRASLEKQGYKIIGSHSGVKICRWTKSQLRGRGGCYKHSFYGIESHRCVEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPVQIVNTAIDLHTKMIKQMKGVPGVTLERLTEGLSPRHCALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQFPDKINSLKPVTQLYVSVDAATKESLKAIDRPLFGDFWERFIDSLKALKDKQQRTVYRLTLVKGWNTEDLDAYSNLFTIGQPDFVEIKGVTYCGNSATSKLTMENVPWHADVKAFSEALAVRSNGEYEAACEHVHSCCVLLAKTTKFKVKDQWFTWIDYEKFHDLVVSGKPFDSKDYMAPTPSWAVYGGAEGGFDPDQARYRKERHHKSN 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 52404825 52411231 + Bda030314.1 Bda08g01288 12144

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g01288 639 PRINTS Flavodoxin signature 139 149 IPR001094 GO:0010181
Bda08g01288 639 PRINTS Flavodoxin signature 101 112 IPR001094 GO:0010181
Bda08g01288 639 PRINTS Flavodoxin signature 164 183 IPR001094 GO:0010181
Bda08g01288 639 PRINTS Flavodoxin signature 53 66 IPR001094 GO:0010181
Bda08g01288 639 ProSiteProfiles Radical SAM core domain profile. 314 557 IPR007197 GO:0003824|GO:0051536
Bda08g01288 639 Gene3D - 44 213 IPR029039 -
Bda08g01288 639 MobiDBLite consensus disorder prediction 619 639 - -
Bda08g01288 639 Pfam Radical SAM superfamily 326 504 IPR007197 GO:0003824|GO:0051536
Bda08g01288 639 Pfam Flavodoxin 54 195 IPR008254 GO:0010181
Bda08g01288 639 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE 5 637 IPR034556 GO:0008033|GO:0051539
Bda08g01288 639 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE 5 637 - -
Bda08g01288 639 Gene3D Aldolase class I 253 584 IPR013785 -
Bda08g01288 639 Pfam Wyosine base formation 509 572 IPR013917 -
Bda08g01288 639 CDD Radical_SAM 326 526 - -
Bda08g01288 639 SUPERFAMILY Flavoproteins 53 203 IPR029039 -
Bda08g01288 639 ProSiteProfiles Flavodoxin-like domain profile. 52 200 IPR008254 GO:0010181
Bda08g01288 639 SFLD tRNA wybutosine-synthesizing 266 576 - -
Bda08g01288 639 SFLD tRNA wybutosine-synthesizing 266 576 IPR034556 GO:0008033|GO:0051539
Bda08g01288 639 SUPERFAMILY Radical SAM enzymes 327 507 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g01288 K15449 TYW1; tRNA wybutosine-synthesizing protein 1 [EC:4.1.3.44] - jre:108991714 1073.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g01288 Bda-Chr8:52404825 Bda09g00966 Bda-Chr9:38762677 1.11E-08 dispersed
Bda08g01288 Bda-Chr8:52404825 Bda01g01918 Bda-Chr1:55362536 2.81E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g939 . . . . . . . . Cmo05g00245 . . . . . Sed11g1032 . . Bhi04g00248 Tan02g1957 Cmetu03g0117 . Hepe10g0647 . Lcy13g1990 Cla08g01493 Cam08g1982 Cec08g1556 Cco08g1693 Clacu08g1672 . Cre08g1455 . . Cone17ag1338 . . . . Cme03g01960 Blo17g00803 . Bda08g01288 . . Bpe05g00087 . Bma05g00116 . . . . Cma05g00237 Car05g00199 . Cpe11g00197 . . . . . . . . . . . . . . . Lsi08g01398 Csa02g02049 Chy03g01465 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009285 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 2 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g01288 Bda_Chr08 FPKM 14.80161 15.337327 0.0 0.0 9.404118 7.831059 8.766658 0.0 0.0