Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g01294 ATGAAAGTTGGATCTAAGAAAGGATGGAAAACCATCGTCCCTTTTCATTTGAAAGGCAAGTCGGTTTCTCATTTTTGTTTCTTACCAAGACCCAAATCACCCGGATATGGTCCGGGGAGAACGCCGGTGTATCTCAACGTTTACGACTTGACACCTATGAACGGCTATGTCTACTGGGCAGGATTCGGTATATTTCACTCGGGCGTTGAAGTAATCTTATTTTGTGCAGTTCATGGAGTGGAGTATGCATTTGGAGCTCATGACTATCCGACCAGTGGTGTTTTTGAGGTTGAACCTCGACAATGCCCGGGCTTCAAGTTCAGAAGGTCGATATTGATTGGGACAACATGCTTGGATCCTGCTGAGGTTAGGGAATTCATGGAGCGACGTTCTTCGAGCTATTTTGGTGATTCGTATCACCTCATTGTCAAGAATTGCAACCATTTCTGCAGGGACATTTGCTATGAGCTTACCGGAAAATCGATTCCTAAATGGGTAAATCGTTTGGCAAAAATAGGCTCAATCTGCAACTGCATACTTCCAGAAGCACTCAAAATATCGGCTGTCCGACATGATCCAATTTACCAAAAATCGGATAATGAAAAGACAAGGCTGAGGAGTGCTTTTAGTAGCTTATCTTCAATCTCCATGAGACAAAGGCAGTTGTCTACGTCCTCGTTATTTCTTCAATCACCATTGAAAGGCTGCCTCCCGTCGTGGGAGCTAAGAAGGTCAAGAAACCGATTATCTAAGGAAAGGTGA 762 43.96 MKVGSKKGWKTIVPFHLKGKSVSHFCFLPRPKSPGYGPGRTPVYLNVYDLTPMNGYVYWAGFGIFHSGVEVILFCAVHGVEYAFGAHDYPTSGVFEVEPRQCPGFKFRRSILIGTTCLDPAEVREFMERRSSSYFGDSYHLIVKNCNHFCRDICYELTGKSIPKWVNRLAKIGSICNCILPEALKISAVRHDPIYQKSDNEKTRLRSAFSSLSSISMRQRQLSTSSLFLQSPLKGCLPSWELRRSRNRLSKER 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 52613966 52616314 + Bda030327.1 Bda08g01294 12150

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g01294 253 ProSiteProfiles PPPDE domain profile. 41 184 IPR008580 GO:0008233
Bda08g01294 253 Gene3D PPPDE domains 37 198 IPR042266 -
Bda08g01294 253 PANTHER DESI-LIKE PROTEIN 3 253 - -
Bda08g01294 253 PANTHER DESUMOYLATING ISOPEPTIDASE 3 253 IPR008580 GO:0008233
Bda08g01294 253 Pfam PPPDE putative peptidase domain 42 182 IPR008580 GO:0008233
Bda08g01294 253 SMART DUF862_2a 41 185 IPR008580 GO:0008233
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g01294 K22763 DESI2, PPPDE1; deubiquitinase DESI2 [EC:3.4.19.12] - vvi:100245551 428.713
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda08g01294 Bda15g00851 CCT
Bda08g01294 Bda14g00540 CCT
Bda08g01294 Bda15g00851 ECH
Bda08g01294 Bda14g00540 ECH
Bda01g01488 Bda08g01294 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01478 Bda-Chr1:50700842 Bda08g01294 Bda-Chr8:52613966 2.35E-159 dispersed
Bda08g01294 Bda-Chr8:52613966 Bda08g01306 Bda-Chr8:52820802 0 dispersed
Bda01g01488 Bda-Chr1:50772478 Bda08g01294 Bda-Chr8:52613966 7.36E-160 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g557 . . . Bda08g01294 . Bpe12g00075 . . . Cmo11g01316 Cma02g00424 . Car02g00280 . Sed01g4040 Cpe04g00245 . Bhi05g01197 Tan02g1941 Cmetu09g0736 . . . . Cla02g00545 Cam02g0568 Cec02g0571 Cco02g0582 Clacu02g0569 Cmu02g0565 Cre02g0896 Cone12ag1137 Cone8ag1184 . . Lsi10g00336 . Chy11g00415 Cme01g01471 . . Bda15g00851 Bda14g00540 Bpe15g00876 . Bma03g00542 . . Cmo02g00425 . . . Car11g01060 . . Cpe05g01237 . . . . . . . Cla09g01744 Cam09g1835 Cec09g1896 Cco09g1988 . . Cre01g0675 Lsi11g01070 Csa02g01223 Chy01g00822 Cme11g00474
Vvi18g904 . . . . . . . . . . . . . Car12g00456 Sed04g3587 . Cpe07g00435 Bhi04g00266 Tan02g0834 Cmetu01g1929 . Hepe02g0532 . Lcy13g2001 Cla08g01507 Cam08g1995 Cec08g1570 Cco08g1707 Clacu08g1685 . Cre08g1468 Cone4ag1896 Cone7ag1808 Cone17ag1325 Cone20ag0151 . . . Cme03g01972 Blo17g00810 Blo18g00822 Bda08g01294 Bda01g01488 Bpe02g01684 Bpe05g00082 Bma01g00768 . . . . Cma12g00485 . . . . . . . . . . . . . . . . . . . Lsi08g01411 Csa02g02035 Chy03g01478 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000619 5 5 3 1 3 3 4 3 3 3 3 2 4 3 3 2 2 6 4 2 3 3 3 3 3 3 3 11 5 2 103
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g01294 Bda_Chr08 FPKM 7.865494 6.83812 11.425176 12.995378 14.516009 13.637804 14.546423 18.200459 17.68718