Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g01317 ATGACAGTATTTCACTTCTTCAACTGCGCGATTCTTACGTTCGGTCCTCACGTCGTTTACTACTCGGCCACCCCTTTGTCGGAGTATGATACGCTCGGTACCTCGACCAAAGCTGCTCTGGTTTATCTTGGAACAGCTTTAGTGAAGCTAGTTTGTCTTGCAACCTTTCTTAAGGTATCAGAGAATGAATATTTCGATCCATATCAGGAACTGTTGAAAGCGCTAATTGGTTTTGTGGATGTTGCTGGGCTCTACTTTGCATTAACCCAGCTGACTCATAGAAACATCTCTCAGAATCACAAGTTTCAGGCAGTTGGTCTAGGTTGGGCGTTTGCTGATTCTCTTTTGCACAGATTAGCTCCACTTTGGGTAGGCGCTAGAGGGCTAGAGTTCACTTGGGAATACATTTTGCAAGGCCTTGAAGCAAATGCAAATCTGGCGTTAAGCATATCCCTTGCTGCATTGGGTTCTTTAATGTGGCTGCGAAAGAACAAGCCAAAGACTTTGATTCCCATAATATATGCTTGCGCTGGCATTGTTGCCACGATGCCGTCTATCACAAGCTATTTAAGGCGAGGCTTAGGTTGGCACCTCCCAAAGGTCGTCGGTTTCGAGCTCTTCACCTCTCTGGCTATGGCTTTAGTTAGTTGGCAGCTCTTTTCTGCTTGTCAAAGACCTTCTGTCTGA 687 45.71 MTVFHFFNCAILTFGPHVVYYSATPLSEYDTLGTSTKAALVYLGTALVKLVCLATFLKVSENEYFDPYQELLKALIGFVDVAGLYFALTQLTHRNISQNHKFQAVGLGWAFADSLLHRLAPLWVGARGLEFTWEYILQGLEANANLALSISLAALGSLMWLRKNKPKTLIPIIYACAGIVATMPSITSYLRRGLGWHLPKVVGFELFTSLAMALVSWQLFSACQRPSV 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 53005972 53009199 - Bda034049 Bda08g01317 12173

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g01317 228 PANTHER SMALL SEVEN TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN 1 228 IPR019164 -
Bda08g01317 228 Pfam Predicted membrane protein (DUF2053) 2 161 IPR019164 -
Bda08g01317 228 PANTHER BNAA08G03740D PROTEIN 1 228 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g01317 - - - egr:104449364 431.795
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g01310 Bda-Chr8:52871956 Bda08g01317 Bda-Chr8:53005972 1.30E-91 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g840 . . . . . . . . . . . Cma09g00195 Car01g01463 . . Cpe06g00133 . . . . . . . . . . . . . . . . . Cone17ag1308 Cone20ag0164 Lsi04g01606 Csa03g04153 Chy04g00567 . . . Bda08g01317 . . Bpe05g00070 . . . . Cmo09g00191 . . . Car09g00165 . . Bhi09g02027 . . . . Mch11g0242 . Cla05g01993 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003631 2 2 2 3 1 1 2 1 2 1 2 0 2 1 1 2 1 4 2 1 1 1 1 1 0 1 1 2 1 2 44