Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g01318 ATGATGGAGATGTTTCAGGAATCAAACGGTATTACGAGGCTGAAATTTGGCGCTGTATTGCACTCTGATCCGAATTTTTCATCGACAGGAAACGACGGCGGGTTTCAGGCGATGCATCACGGCGGCATTTCAGATGCTGGTAATGCCTTTCACGAGCCTAACCGAGCCAGCGGCGACGGCTCTCCTGTGACCATGTCACCGTGGAATAAAACAACGCCGTTTTCAAATCCTCCATGGCCAGAGTTTCGAGATTACAGGCAGCCGCAGAATGCCCTTATCGGCTCCCTTATTCGAGAAGAAGGCCATATTTACTCTCTTGCATCGTCTGGAGAGCTCTTATACACCGGCTCCGATAGCAAAAACATTCGGGTTTGGAAAAATCTTCAAGAATTTTCTAGGTTTAAATCTAGCAGCGGATTGGTCAAAGCAATTGTAATCTCCGGCGAGAGGATCTTCACCGGTCACCAAGACGGAAAGATTCGTGTCTGGATAGTATCGGACAAGAACCAGTGTATTCATAAAAGAGCCGGAACTTTACCCACTCTAAAAGACGTTTTAAGAACCTCCATACATTGGAAAAATTACGTCGAAGTTCGACGGAATCGGAGCACTCTCTGGATTAGACACTCCGATGCCATCTCTTGCATGAGCATCAGCGAAGACGAAGAGTTCCTTTACTCTGCGTCATGGGATCGAACCATGAAAGTATGGAGACTCTACGACTCGAAATGCATCGAATCCGTCCTCGTCCACGACGACGCCGTTAACTCCGTTGTCACCAGCTCCGGTGGATTGGTCTTCACCGGCTCCGCCGATGGCACCGTCAAGATTTGGCAGAGAGAGAAAAGAGGAAAAGGAACGAAACACACACTCGTTCAAATTCTTCTAAAGCAAGACTCAGCAGTGACGGCTCTCGCCGTTAACGATGGTGGCTCAATCGTTTATTCCGGTTCTTCCGACGGCCTGGTTAATTTCTGGTGGTTGGAAAAGAAGTTGACTTCGAGCAACGGCGTCGTCCTCAAAGGTCACAGGCTTGCGATTCTGTGCCTCGCGGCGCATGGTAATATGGTGTTCAGCGGTTCAGCTGATAAGACCATATGCGTGTGGAGAAGAAAGGGCGTGATTCACACGTGTGTATCCGTATTGGCCGGTCACAGTGGGCCAGTGAAGTGCTTGGCCGTAGAGGATGATAGAGATTCAAAGAGAAAGGGTGGTGATCAAAATCAACGGTGGATATTGTACAGTGGGAGCCTAGATAAATCAGTAAAAGTGTGGAGCGTGTGTGAGAGCGTACCTGATTACAATCAGATGGCTATGGCGTCAGCAGCAGCAGAGCATAGGGTCTGA 1347 48.92 MMEMFQESNGITRLKFGAVLHSDPNFSSTGNDGGFQAMHHGGISDAGNAFHEPNRASGDGSPVTMSPWNKTTPFSNPPWPEFRDYRQPQNALIGSLIREEGHIYSLASSGELLYTGSDSKNIRVWKNLQEFSRFKSSSGLVKAIVISGERIFTGHQDGKIRVWIVSDKNQCIHKRAGTLPTLKDVLRTSIHWKNYVEVRRNRSTLWIRHSDAISCMSISEDEEFLYSASWDRTMKVWRLYDSKCIESVLVHDDAVNSVVTSSGGLVFTGSADGTVKIWQREKRGKGTKHTLVQILLKQDSAVTALAVNDGGSIVYSGSSDGLVNFWWLEKKLTSSNGVVLKGHRLAILCLAAHGNMVFSGSADKTICVWRRKGVIHTCVSVLAGHSGPVKCLAVEDDRDSKRKGGDQNQRWILYSGSLDKSVKVWSVCESVPDYNQMAMASAAAEHRV 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 53022834 53024180 - Bda030356.1 Bda08g01318 12174

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g01318 448 Pfam WD domain, G-beta repeat 377 426 IPR001680 GO:0005515
Bda08g01318 448 Pfam Nucleoporin Nup120/160 91 339 - -
Bda08g01318 448 SUPERFAMILY WD40 repeat-like 88 427 IPR036322 GO:0005515
Bda08g01318 448 PANTHER PROTEIN JINGUBANG 11 441 - -
Bda08g01318 448 ProSiteProfiles Trp-Asp (WD) repeats profile. 206 247 IPR001680 GO:0005515
Bda08g01318 448 CDD WD40 100 426 - -
Bda08g01318 448 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 206 239 - -
Bda08g01318 448 PRINTS G protein beta WD-40 repeat signature 266 280 IPR020472 -
Bda08g01318 448 PRINTS G protein beta WD-40 repeat signature 413 427 IPR020472 -
Bda08g01318 448 PRINTS G protein beta WD-40 repeat signature 225 239 IPR020472 -
Bda08g01318 448 ProSiteProfiles Trp-Asp (WD) repeats profile. 295 326 IPR001680 GO:0005515
Bda08g01318 448 SMART WD40_4 200 238 IPR001680 GO:0005515
Bda08g01318 448 SMART WD40_4 375 426 IPR001680 GO:0005515
Bda08g01318 448 SMART WD40_4 127 164 IPR001680 GO:0005515
Bda08g01318 448 SMART WD40_4 241 279 IPR001680 GO:0005515
Bda08g01318 448 SMART WD40_4 333 370 IPR001680 GO:0005515
Bda08g01318 448 SMART WD40_4 89 126 IPR001680 GO:0005515
Bda08g01318 448 SMART WD40_4 288 327 IPR001680 GO:0005515
Bda08g01318 448 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 11 441 IPR045182 -
Bda08g01318 448 ProSiteProfiles Trp-Asp (WD) repeats profile. 248 279 IPR001680 GO:0005515
Bda08g01318 448 Gene3D - 188 447 IPR015943 GO:0005515
Bda08g01318 448 Gene3D - 56 185 IPR015943 GO:0005515
Bda08g01318 448 ProSiteProfiles Trp-Asp (WD) repeats profile. 340 369 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g01318 - - - cit:102609465 607.831
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda08g01318 Bda14g00532 CCT
Bda08g01318 Bda15g00021 CCT
Bda08g01318 Bda14g00532 ECH
Bda08g01318 Bda15g00021 ECH
Bda06g01024 Bda08g01318 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00454 Bda-Chr1:31592255 Bda08g01318 Bda-Chr8:53022834 0 dispersed
Bda01g00554 Bda-Chr1:32472959 Bda08g01318 Bda-Chr8:53022834 0 dispersed
Bda03g00243 Bda-Chr3:1935770 Bda08g01318 Bda-Chr8:53022834 0 dispersed
Bda08g01318 Bda-Chr8:53022834 Bda14g00532 Bda-Chr14:3851052 1.40E-162 dispersed
Bda08g01311 Bda-Chr8:52901453 Bda08g01318 Bda-Chr8:53022834 0 proximal
Bda03g00451 Bda-Chr3:3852722 Bda08g01318 Bda-Chr8:53022834 3.44E-09 transposed
Bda01g00570 Bda-Chr1:32708441 Bda08g01318 Bda-Chr8:53022834 4.11E-11 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g527 . Blo15g00718 Bda06g01024 Bda08g01318 Bpe07g00404 Bpe12g00071 . Bma12g00483 Cmo19g00652 Cmo11g01329 . . . . Sed11g0992 . . Bhi05g01171 Tan02g1913 Cmetu03g1602 . Hepe02g0551 . . Cla02g00560 Cam02g0588 Cec02g0589 Cco02g0600 Clacu02g0586 Cmu02g0584 Cre02g0914 . . . . . Csa07g00816 . . . Blo13g00559 Bda15g00021 Bda14g00532 . . . . . . . Cma11g01780 Cma19g00639 . . . . . . . . . . . . . . . . . . . . Chy01g00013 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013246 2 1 1 1 1 1 0 1 1 1 1 1 2 0 1 2 1 0 0 1 1 1 1 1 0 0 1 2 1 0 27