Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g01343 ATGTACGCGGTGGAGAGGTTAGGTAGCTACATTACGCGAGGCGTTTATTCAGTTTCCGGGCCATTTCATCCTTTCGGGGGCGCGGTAGACATTATCGTTGTTGAACAGCCAGATGGGAGCTTCAAGTCCTCACCTTGGTATGTGCGTTTTGGAAAATTTCAAGGGGTTTTGAAGACGAGAGAGAAGGTTGTTAACGTGAGCGTCAATGGCGTAGAAGCTAAATTCCACATGTATTTGAATCATAAAGGGGAAGCTTACTTTTTGAGAGAGGTAGATGATAAAGAAGATTCTATGAGAGGTGATTATGATTCTAAGAATTTTGCTGCATTTGATGGAATTGAGAAGAGCAATAGTAGGGTAATGGGTAGAACCGGTTCTCGTCGATCAAGATTGCTTCGGCTTGTATTTGGCCGAAAGCGAGCCGAATTCGCTGCAAATCTCTTGGAGGTGAAGTGGTCAACTAATCTCACCTCTGATCCTAGGATTTTGAAAGATAATGGAGTGAGTTCTTCTGCTTTGAGTAAATTAGATGGCAACGATGCTAGAAACGTAAATATTAGCGATGGGGAAATCAACGAGAGTTCATCGTTACTAGATAACGCGAATACTGATCGAGAAAGTGATTATCTTGATCAGAAGCCGTGTAATGCGGTGGATTCGGTTGTTGAAAATGGAGCTGTTGAAGCTTTCATGATTGACGGGGAAGGATCGGAAGGGATTCATGAAATTATATATGAAACTGCAGGACAGATTGATGAGGTGATCGTTGAAACAACTGAACAGATTGCGGATAATTCTTCCGAATCGTATGGTTCTCGGAGTTTGATCAAATTAGATGGAGTAGATTCGTTCGATTATCTTGAAATTTCAGAGAGCTCCGCATTGAAAGGCGACGATTCCATGGATACAGAGCTGTCAATTAAGGTATTTGATGGAAAAATACAGTTGATGGCTGACCTGTTCGGAAAATTTTCAACAGATCCGTCGGAATCGACTCTTGTCCCTGGAGGAAACTGGAGAATATGGCCTTTTTATTTCAGTAGATCGAGATCAAGGGAAGGTATGCCACCGATATTCGACGATATTAGAAATTCCAATGTCGAAAATGGCTTAGAGAGAGATGATTATGTGGATGAAGATACAAACCACTTTAAGCGTAAGGTAGAGAAACAAATGGTGAGGACATTTTTACCAACTTCTGACCAGTTGGCGTCTTTAAATCTGGTCGAAGGAAGAAACACGATAGCTTTCACATTCTCAACCAAAATGCATGGAAAGCAGGAGGTCGATGCGAGAATTTATTTATGGAAATGGAACACTCGAATTGTCATCTCGGACGTGGACGGGACGATTACAAAATCAGATGTTCTTGGTCAGTTCATGCCCATGGTCGGAATGGATTGGTCGCAGACAGGCGTGGCTCATTTGTTTACGGCTATTAAGGAAAACGGGTATCAAATGCTTTTTCTCAGCGCTCGTGCGATCTCACAGGCATATATTACCAGACAATTTCTGTTCAATCTTAAGCAGGATGGGAAGGCTTTACCTGAGGGTCCAGTCGTTATATCACCGGACGGGCTCTTTCCTTCTTTATATCGAGAAGTTATTCGACGGGCTCCTCACGAGTTCAAGATCAACATCAGGGAATTGTTTCCTGCAGACTGCAATCCGTTCTACGCAGGGTTTGGAAATCGGGATACTGACGAAATCAGCTACCTCAAAGTTGGAATCCCCATCGGAAAAATCTTCATTATCAATCCTAAGGGTGAGATTACCGTCAATCGCCGAGTTGACTCAAAATCTTATACTTCCCTTCACGATCTCGTTCATGGCATCTTCCCACCCATCGATTCAACCGAGCAGGAAGATTTTAATTCATGGAATTACTGGAAACTGCCTATTGTTTACTTAGATCTTTGA 1920 42.66 MYAVERLGSYITRGVYSVSGPFHPFGGAVDIIVVEQPDGSFKSSPWYVRFGKFQGVLKTREKVVNVSVNGVEAKFHMYLNHKGEAYFLREVDDKEDSMRGDYDSKNFAAFDGIEKSNSRVMGRTGSRRSRLLRLVFGRKRAEFAANLLEVKWSTNLTSDPRILKDNGVSSSALSKLDGNDARNVNISDGEINESSSLLDNANTDRESDYLDQKPCNAVDSVVENGAVEAFMIDGEGSEGIHEIIYETAGQIDEVIVETTEQIADNSSESYGSRSLIKLDGVDSFDYLEISESSALKGDDSMDTELSIKVFDGKIQLMADLFGKFSTDPSESTLVPGGNWRIWPFYFSRSRSREGMPPIFDDIRNSNVENGLERDDYVDEDTNHFKRKVEKQMVRTFLPTSDQLASLNLVEGRNTIAFTFSTKMHGKQEVDARIYLWKWNTRIVISDVDGTITKSDVLGQFMPMVGMDWSQTGVAHLFTAIKENGYQMLFLSARAISQAYITRQFLFNLKQDGKALPEGPVVISPDGLFPSLYREVIRRAPHEFKINIRELFPADCNPFYAGFGNRDTDEISYLKVGIPIGKIFIINPKGEITVNRRVDSKSYTSLHDLVHGIFPPIDSTEQEDFNSWNYWKLPIVYLDL 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 53797412 53803600 + Bda030391.1 Bda08g01343 12199

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g01343 639 Pfam LNS2 (Lipin/Ned1/Smp2) 395 614 IPR013209 -
Bda08g01343 639 PANTHER GH19076P 326 637 - -
Bda08g01343 639 PANTHER GH19076P 1 250 - -
Bda08g01343 639 SMART lns2 442 594 IPR031315 -
Bda08g01343 639 PANTHER LIPIN 1 250 IPR026058 -
Bda08g01343 639 PANTHER LIPIN 326 637 IPR026058 -
Bda08g01343 639 SUPERFAMILY HAD-like 434 582 IPR036412 -
Bda08g01343 639 Pfam lipin, N-terminal conserved region 12 99 IPR007651 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g01343 K15728 LPIN; phosphatidate phosphatase LPIN [EC:3.1.3.4] - egt:105971408 570.852
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00765 Bda-Chr3:6412701 Bda08g01343 Bda-Chr8:53797412 1.69E-37 dispersed
Bda08g01245 Bda-Chr8:50945909 Bda08g01343 Bda-Chr8:53797412 6.36E-14 dispersed
Bda08g01343 Bda-Chr8:53797412 Bda01g00260 Bda-Chr1:27151413 5.28E-38 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g778 Blo01g01534 . . . Bpe02g00423 . . Bma01g02284 Cmo05g00189 Cmo12g00473 . . . Car12g00499 Sed11g0970 . Cpe07g00473 Bhi04g00335 Tan02g1871 . . . . Lcy13g2049 Cla08g01556 Cam08g2051 Cec08g1628 Cco08g1761 Clacu08g1737 . Cre08g1523 . . Cone17ag0842 Cone20ag0186 . . . Cme03g02024 Blo17g00849 . Bda08g01343 . . Bpe05g00055 . . . . . Cma12g00531 Cma05g00190 Car05g00160 . Cpe11g00159 . . . . . . . . . . . . . . . Lsi08g01459 Csa02g01979 Chy03g01528 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006092 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 38