Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g01358 ATGAGCTGCAATGGCTGCAGAGTTCTGAGAAAAGGGTGCGGCGAGACGTGTGTACTGAGATCGTGCCTGCTCTGGATCGACTCGCCGGAAGCCCAAGGCAACGCCACCTTGTTTCTCGCTAAGTTCTTCGGCCGGAGCGACCTATTGTCCTTCATCTCCGCCGTCCCCAATCATCAAAGACCCGCTTTGTTTAAGTCGCTATTATTCGAAGCGTGTGGAAGAACGGTGAATCCGGTGAACGGAGCGGTGGGGCTATTAATGACCGGAAACTGGCATGTTTGCCAGGCGGCAGTGGAAACGGTGCTCTCCGGCGACGTTCCCCGGCAAATACAGGGGCCTGCAGCCGGACACCCGACCCCGAACTTGGAAGATTCTCTACTCACATCTCATACGGGCACATGCACGGAGCTAATCCCATCTTCCCTCTTCTACCCACCGTCGTCGTCCATTGTCAAAGCAAGGGAATATCAACCATCCGATTTCGCCAATCTCTCTCAAACAAAACTCACCGGGAAATCAACCGTAAGCAGCAGCCATGGGGGCTGCAAAGATCGGAAACTGCTAAACTTATTTGTCTGA 579 53.89 MSCNGCRVLRKGCGETCVLRSCLLWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPNHQRPALFKSLLFEACGRTVNPVNGAVGLLMTGNWHVCQAAVETVLSGDVPRQIQGPAAGHPTPNLEDSLLTSHTGTCTELIPSSLFYPPSSSIVKAREYQPSDFANLSQTKLTGKSTVSSSHGGCKDRKLLNLFV 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 54032646 54033313 + Bda030408.1 Bda08g01358 12214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g01358 192 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 161 - -
Bda08g01358 192 PANTHER LOB DOMAIN-CONTAINING PROTEIN 39-LIKE 1 161 - -
Bda08g01358 192 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
Bda08g01358 192 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g01358 Bda-Chr8:54032646 Bda13g01768 Bda-Chr13:40996293 1.60E-42 dispersed
Bda10g00002 Bda-Chr10:51782 Bda08g01358 Bda-Chr8:54032646 3.80E-56 transposed
Bda11g01472 Bda-Chr11:21231420 Bda08g01358 Bda-Chr8:54032646 8.39E-59 transposed
Bda01g01591 Bda-Chr1:51762676 Bda08g01358 Bda-Chr8:54032646 3.79E-92 wgd
Bda01g00585 Bda-Chr1:32868651 Bda08g01358 Bda-Chr8:54032646 5.78E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16331 PF03195 LOB 1.00E-24 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g01358 - - csv:101208953 229.565