Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g01367 ATGTTTTCTCTTGGCTTTTCTCCCATTTTTTTTACATGGAAAAATCACAAGTCAACCTCGCCTCATCATTTGGTCTTGCTACTTCCAAGCACTCACCTCATTTCCCACTTTCCTTTTCAATTTTCACCACCTTCTTCGTCTTCTCTGATCATTCTCCTATATAATTACCCTCCATTCTCTCTCGTCTTCTCCTCCTCCATGGGAGTAGGCATGAAGGTCCATCAATTCGCACGTGGGTTTTGGGAGCTCGAACCACCCTCCCTCTCCCTCGCCTGCAAGCGTCTCCGTCCGCTCGCTCCGAAGCTTCAAACCAACAATGACTCCACCATCTCCTCCTTCGATCTCAAGACCTTCATCAGACCAGACTCGGGCCCCAGACCAAACCCTTCTTCTTCCTTCTCCTCAGAAGACAAGAGAGATTTACTTCCCGTGGAGACGCTTCCTGGAGGGACAAGATGGAACCCGACTCAAGAACAGATTGGGATATTGGAGATGCTTTACAGGGGAGGAATGAGGACTCCTAATGCACAACAGATAGAACAAATCACAACCCAGCTAGGTAAATATGGCAAAATCGAAGGTAAAAATGTATTTTATTGGTTTCAGAACCATAAAGCCCGAGAAAGACAGAAGCAAAAGAGAAACAGTCTTGGTCTTTGCCATAGCCCAAGAACAGCTGTAGCAAATTCTAGGAGGGAGTAG 702 46.44 MFSLGFSPIFFTWKNHKSTSPHHLVLLLPSTHLISHFPFQFSPPSSSSLIILLYNYPPFSLVFSSSMGVGMKVHQFARGFWELEPPSLSLACKRLRPLAPKLQTNNDSTISSFDLKTFIRPDSGPRPNPSSSFSSEDKRDLLPVETLPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITTQLGKYGKIEGKNVFYWFQNHKARERQKQKRNSLGLCHSPRTAVANSRRE 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 54271883 54272756 + Bda030421.1 Bda08g01367 12223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g01367 233 MobiDBLite consensus disorder prediction 210 233 - -
Bda08g01367 233 SUPERFAMILY Homeodomain-like 149 216 IPR009057 -
Bda08g01367 233 SMART HOX_1 148 215 IPR001356 GO:0003677
Bda08g01367 233 CDD homeodomain 151 212 IPR001356 GO:0003677
Bda08g01367 233 Gene3D - 150 217 - -
Bda08g01367 233 MobiDBLite consensus disorder prediction 117 150 - -
Bda08g01367 233 ProSiteProfiles 'Homeobox' domain profile. 156 211 IPR001356 GO:0003677
Bda08g01367 233 Pfam Homeodomain 151 210 IPR001356 GO:0003677
Bda08g01367 233 PANTHER WUSCHEL-RELATED HOMEOBOX 4 71 228 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda03g00190 Bda08g01367 CCT
Bda03g00190 Bda08g01367 ECH
Bda01g01597 Bda08g01367 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01609 Bda-Chr1:51961173 Bda08g01367 Bda-Chr8:54271883 1.63E-92 dispersed
Bda02g00815 Bda-Chr2:48762071 Bda08g01367 Bda-Chr8:54271883 3.78E-32 dispersed
Bda08g01367 Bda-Chr8:54271883 Bda11g01802 Bda-Chr11:53062380 6.89E-28 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16332 PF00046 Homeodomain 7.50E-19 CL0123 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g01367 - - twl:120000509 261.151