Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g01368 ATGGCGCAGATTCAGGCTCAACATCAGGCTCCGATGGCTGGTTCTGGTGCGAATGGCGTGGCTGTGGCTGTCGGAACGGGCCCTGGGGTGGCCCCGTTTATTGCGACGTCGCTTTATGTTGGAGATCTTGAAATGAACGTCACGGACTCGCAGCTTTATGAACTGTTTAATCAAATTGGTCAGGTGCTATCTGTTCGTGTCTGTAGGGACATGAGCACTCGTCGATCTCTCGGTTATGGATATGTGAACTACAACAACTCTCAAGATGCGGCCAGGGCACTAGATGAATTAAATTTTACTGTGTTGAATAATAAGGCCATTAGAATTATGTATTCTCACCGCGATCCAAGTAGCCGCAAGAGTGGTACTGCAAATATTTTCATCAAGAATCTGGACAAGGCTATTGATCATAAAGCATTACACGAGACTTTTTCATCCTTTGGAAGTATTCTTTCATGCAAGATAGCTCTTGATACTTCTGGCCTATCCAAAGGCTATGGTTTTGTTCAATTTGAAAATGAAGAGTCTGCCCAAAATGCAATAGACAAGTTAAATGGGATGCTAATTAATGACAAGCAGGTTTATGTTGGACACTTCCTTCGTAAACACGAAAGAGAGAGTTCTTCAGATAAGGAAAAATTTAATAATGTCTATGTGAAGAATTTGTCCGAATCAACAACAGATGAAGACTTGAAGAATATTTTTGGTGAATATGGAACTATCACCAGTGCTGTGGTGATGCGAGATGGAGATGGAAAGTCAAAATGTTTTGGTTTTGTTAACTTTGAAAGCGAAGATGATGCTGTCAAAGCTGTTGATGAACTGAATGGGAAGAAATTTGAGGAAAAGGAATGGTATGTTGGGAAAGCTCAGAAAAAATCAGAACGAGAAGTTGAGCTGAAGGGCCGATTTGAGCAAACTGTTAAGGAAATATTTGACAAAAATCAAGGCGTAAACTTGTATATCAAGAATTTGGATGACAGCATTGATGATGAGAAACTCAGAAGTTTTTTTGCTGAATTTGGTTCAATTACTTCATGCAAGGTTATGTGCGATCGTAATGGAGTCAGTAGAGGTTCTGGATTTGTTGCTTTTGCAACTCAGGAAGAGGCATCTCGTGCTCTTGCTGAGATGAATGGTAAAATGATCGTCAGTAAACCTCTCTATGTAGCACTGGCACAGAGAAAAGAAGAGAGAAGAGCTAGGTTGCAGGCACAATTTTCTCAAATGAGGCCTGTGGCAATTGCACCGGCAGTTCCTCGTTTGCCTATGTTTCATCCAGGTGCTGTGGGTCTCGGTCAACAATTTTTATATGGACAACCTCCTCCTGCAATAGTTCCTCCTCAAGCTGGATTTGGTTACCAGCAGCAACTTGTTCCGGGAATGAGACCTGGTGGGTCTCCTATGCCAAACTTCTTTGTTCCTATGGTTCAGCAGGGGCAGCCTGGTCAACGCCCTGGAGGTCGGCGTGGGTCAGGTCCTCTGCAACAAACCCAGCAGCCTGTTCCACTGATGCAACCTCAGATGATTCCAAGGGGGGGACGACATTATTATCGATATCCTCCCCCTGGTCGCAACATGCAAGATGGACCAATGCCTGGTTTTGCTGGAGGATTGCTTTCATCTCCTTATGAGTTGGGTGGCATGCCAATGCGAGATCCATCTCTTGGACAGTCTGCTCCTGTACCTGCTTTGGCTACTGCTCTTGCCAATGCTCCTCCAGACCAGCAAAGGATGATGCTTGGGGAAGCATTGTATCCCCTGGTGGATCAGTTGGAGCATGAATCAGCAGCTAAGGTTACTGGGATGCTCCTGGAGATGGACCAGACTGAGGTGTTGCACCTGCTCGAGTCACCTGAGGCTTTGAGGGCAAAAGTTGCAGAGGCATTGGAGGTTCTGAGGAGTGTTGCCCAACAGCAGGGCAATGTGGCAGCTGATCAGCTGTCGTCCCTCTCTCTCGGCGATGATCTTTAG 1974 45.44 MAQIQAQHQAPMAGSGANGVAVAVGTGPGVAPFIATSLYVGDLEMNVTDSQLYELFNQIGQVLSVRVCRDMSTRRSLGYGYVNYNNSQDAARALDELNFTVLNNKAIRIMYSHRDPSSRKSGTANIFIKNLDKAIDHKALHETFSSFGSILSCKIALDTSGLSKGYGFVQFENEESAQNAIDKLNGMLINDKQVYVGHFLRKHERESSSDKEKFNNVYVKNLSESTTDEDLKNIFGEYGTITSAVVMRDGDGKSKCFGFVNFESEDDAVKAVDELNGKKFEEKEWYVGKAQKKSEREVELKGRFEQTVKEIFDKNQGVNLYIKNLDDSIDDEKLRSFFAEFGSITSCKVMCDRNGVSRGSGFVAFATQEEASRALAEMNGKMIVSKPLYVALAQRKEERRARLQAQFSQMRPVAIAPAVPRLPMFHPGAVGLGQQFLYGQPPPAIVPPQAGFGYQQQLVPGMRPGGSPMPNFFVPMVQQGQPGQRPGGRRGSGPLQQTQQPVPLMQPQMIPRGGRHYYRYPPPGRNMQDGPMPGFAGGLLSSPYELGGMPMRDPSLGQSAPVPALATALANAPPDQQRMMLGEALYPLVDQLEHESAAKVTGMLLEMDQTEVLHLLESPEALRAKVAEALEVLRSVAQQQGNVAADQLSSLSLGDDL 657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 54274549 54278542 + Bda030422.1 Bda08g01368 12224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g01368 657 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 318 395 IPR000504 GO:0003723
Bda08g01368 657 CDD RRM3_I_PABPs 214 293 - -
Bda08g01368 657 SUPERFAMILY RNA-binding domain, RBD 214 398 IPR035979 GO:0003676
Bda08g01368 657 PANTHER POLYADENYLATE-BINDING PROTEIN 25 643 - -
Bda08g01368 657 CDD RRM4_I_PABPs 317 395 - -
Bda08g01368 657 SMART rrm2_1 125 197 IPR003954 GO:0003676
Bda08g01368 657 SMART rrm2_1 37 110 IPR003954 GO:0003676
Bda08g01368 657 SMART rrm2_1 216 288 IPR003954 GO:0003676
Bda08g01368 657 SMART rrm2_1 319 391 IPR003954 GO:0003676
Bda08g01368 657 MobiDBLite consensus disorder prediction 478 500 - -
Bda08g01368 657 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 215 292 IPR000504 GO:0003723
Bda08g01368 657 PANTHER RNA BINDING PROTEIN 25 643 - -
Bda08g01368 657 SUPERFAMILY PABC (PABP) domain 500 644 IPR036053 GO:0003723
Bda08g01368 657 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Bda08g01368 657 Gene3D - 557 640 - -
Bda08g01368 657 SUPERFAMILY RNA-binding domain, RBD 36 205 IPR035979 GO:0003676
Bda08g01368 657 CDD RRM2_I_PABPs 122 198 IPR045305 -
Bda08g01368 657 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 561 638 IPR002004 GO:0003723
Bda08g01368 657 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 37 634 IPR006515 GO:0003723
Bda08g01368 657 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 126 194 IPR000504 GO:0003723
Bda08g01368 657 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 320 388 IPR000504 GO:0003723
Bda08g01368 657 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 108 IPR000504 GO:0003723
Bda08g01368 657 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 217 285 IPR000504 GO:0003723
Bda08g01368 657 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 124 201 IPR000504 GO:0003723
Bda08g01368 657 Gene3D - 307 408 IPR012677 -
Bda08g01368 657 Gene3D - 205 306 IPR012677 -
Bda08g01368 657 SMART rrm1_1 125 197 IPR000504 GO:0003723
Bda08g01368 657 SMART rrm1_1 216 288 IPR000504 GO:0003723
Bda08g01368 657 SMART rrm1_1 37 110 IPR000504 GO:0003723
Bda08g01368 657 SMART rrm1_1 319 391 IPR000504 GO:0003723
Bda08g01368 657 CDD RRM1_I_PABPs 37 116 - -
Bda08g01368 657 Gene3D - 116 204 IPR012677 -
Bda08g01368 657 Gene3D - 34 115 IPR012677 -
Bda08g01368 657 Pfam Poly-adenylate binding protein, unique domain 569 633 IPR002004 GO:0003723
Bda08g01368 657 SMART poly_2 573 636 IPR002004 GO:0003723
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g01368 Bda-Chr8:54274549 Bda15g00040 Bda-Chr15:1849466 0 dispersed
Bda08g01368 Bda-Chr8:54274549 Bda01g01608 Bda-Chr1:51929890 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g01368 K13126 - zju:107419988 986.867