Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda08g01368 | ATGGCGCAGATTCAGGCTCAACATCAGGCTCCGATGGCTGGTTCTGGTGCGAATGGCGTGGCTGTGGCTGTCGGAACGGGCCCTGGGGTGGCCCCGTTTATTGCGACGTCGCTTTATGTTGGAGATCTTGAAATGAACGTCACGGACTCGCAGCTTTATGAACTGTTTAATCAAATTGGTCAGGTGCTATCTGTTCGTGTCTGTAGGGACATGAGCACTCGTCGATCTCTCGGTTATGGATATGTGAACTACAACAACTCTCAAGATGCGGCCAGGGCACTAGATGAATTAAATTTTACTGTGTTGAATAATAAGGCCATTAGAATTATGTATTCTCACCGCGATCCAAGTAGCCGCAAGAGTGGTACTGCAAATATTTTCATCAAGAATCTGGACAAGGCTATTGATCATAAAGCATTACACGAGACTTTTTCATCCTTTGGAAGTATTCTTTCATGCAAGATAGCTCTTGATACTTCTGGCCTATCCAAAGGCTATGGTTTTGTTCAATTTGAAAATGAAGAGTCTGCCCAAAATGCAATAGACAAGTTAAATGGGATGCTAATTAATGACAAGCAGGTTTATGTTGGACACTTCCTTCGTAAACACGAAAGAGAGAGTTCTTCAGATAAGGAAAAATTTAATAATGTCTATGTGAAGAATTTGTCCGAATCAACAACAGATGAAGACTTGAAGAATATTTTTGGTGAATATGGAACTATCACCAGTGCTGTGGTGATGCGAGATGGAGATGGAAAGTCAAAATGTTTTGGTTTTGTTAACTTTGAAAGCGAAGATGATGCTGTCAAAGCTGTTGATGAACTGAATGGGAAGAAATTTGAGGAAAAGGAATGGTATGTTGGGAAAGCTCAGAAAAAATCAGAACGAGAAGTTGAGCTGAAGGGCCGATTTGAGCAAACTGTTAAGGAAATATTTGACAAAAATCAAGGCGTAAACTTGTATATCAAGAATTTGGATGACAGCATTGATGATGAGAAACTCAGAAGTTTTTTTGCTGAATTTGGTTCAATTACTTCATGCAAGGTTATGTGCGATCGTAATGGAGTCAGTAGAGGTTCTGGATTTGTTGCTTTTGCAACTCAGGAAGAGGCATCTCGTGCTCTTGCTGAGATGAATGGTAAAATGATCGTCAGTAAACCTCTCTATGTAGCACTGGCACAGAGAAAAGAAGAGAGAAGAGCTAGGTTGCAGGCACAATTTTCTCAAATGAGGCCTGTGGCAATTGCACCGGCAGTTCCTCGTTTGCCTATGTTTCATCCAGGTGCTGTGGGTCTCGGTCAACAATTTTTATATGGACAACCTCCTCCTGCAATAGTTCCTCCTCAAGCTGGATTTGGTTACCAGCAGCAACTTGTTCCGGGAATGAGACCTGGTGGGTCTCCTATGCCAAACTTCTTTGTTCCTATGGTTCAGCAGGGGCAGCCTGGTCAACGCCCTGGAGGTCGGCGTGGGTCAGGTCCTCTGCAACAAACCCAGCAGCCTGTTCCACTGATGCAACCTCAGATGATTCCAAGGGGGGGACGACATTATTATCGATATCCTCCCCCTGGTCGCAACATGCAAGATGGACCAATGCCTGGTTTTGCTGGAGGATTGCTTTCATCTCCTTATGAGTTGGGTGGCATGCCAATGCGAGATCCATCTCTTGGACAGTCTGCTCCTGTACCTGCTTTGGCTACTGCTCTTGCCAATGCTCCTCCAGACCAGCAAAGGATGATGCTTGGGGAAGCATTGTATCCCCTGGTGGATCAGTTGGAGCATGAATCAGCAGCTAAGGTTACTGGGATGCTCCTGGAGATGGACCAGACTGAGGTGTTGCACCTGCTCGAGTCACCTGAGGCTTTGAGGGCAAAAGTTGCAGAGGCATTGGAGGTTCTGAGGAGTGTTGCCCAACAGCAGGGCAATGTGGCAGCTGATCAGCTGTCGTCCCTCTCTCTCGGCGATGATCTTTAG | 1974 | 45.44 | MAQIQAQHQAPMAGSGANGVAVAVGTGPGVAPFIATSLYVGDLEMNVTDSQLYELFNQIGQVLSVRVCRDMSTRRSLGYGYVNYNNSQDAARALDELNFTVLNNKAIRIMYSHRDPSSRKSGTANIFIKNLDKAIDHKALHETFSSFGSILSCKIALDTSGLSKGYGFVQFENEESAQNAIDKLNGMLINDKQVYVGHFLRKHERESSSDKEKFNNVYVKNLSESTTDEDLKNIFGEYGTITSAVVMRDGDGKSKCFGFVNFESEDDAVKAVDELNGKKFEEKEWYVGKAQKKSEREVELKGRFEQTVKEIFDKNQGVNLYIKNLDDSIDDEKLRSFFAEFGSITSCKVMCDRNGVSRGSGFVAFATQEEASRALAEMNGKMIVSKPLYVALAQRKEERRARLQAQFSQMRPVAIAPAVPRLPMFHPGAVGLGQQFLYGQPPPAIVPPQAGFGYQQQLVPGMRPGGSPMPNFFVPMVQQGQPGQRPGGRRGSGPLQQTQQPVPLMQPQMIPRGGRHYYRYPPPGRNMQDGPMPGFAGGLLSSPYELGGMPMRDPSLGQSAPVPALATALANAPPDQQRMMLGEALYPLVDQLEHESAAKVTGMLLEMDQTEVLHLLESPEALRAKVAEALEVLRSVAQQQGNVAADQLSSLSLGDDL | 657 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 54274549 | 54278542 | + | Bda030422.1 | Bda08g01368 | 12224 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda08g01368 | 657 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 318 | 395 | IPR000504 | GO:0003723 | |
Bda08g01368 | 657 | CDD | RRM3_I_PABPs | 214 | 293 | - | - | |
Bda08g01368 | 657 | SUPERFAMILY | RNA-binding domain, RBD | 214 | 398 | IPR035979 | GO:0003676 | |
Bda08g01368 | 657 | PANTHER | POLYADENYLATE-BINDING PROTEIN | 25 | 643 | - | - | |
Bda08g01368 | 657 | CDD | RRM4_I_PABPs | 317 | 395 | - | - | |
Bda08g01368 | 657 | SMART | rrm2_1 | 125 | 197 | IPR003954 | GO:0003676 | |
Bda08g01368 | 657 | SMART | rrm2_1 | 37 | 110 | IPR003954 | GO:0003676 | |
Bda08g01368 | 657 | SMART | rrm2_1 | 216 | 288 | IPR003954 | GO:0003676 | |
Bda08g01368 | 657 | SMART | rrm2_1 | 319 | 391 | IPR003954 | GO:0003676 | |
Bda08g01368 | 657 | MobiDBLite | consensus disorder prediction | 478 | 500 | - | - | |
Bda08g01368 | 657 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 215 | 292 | IPR000504 | GO:0003723 | |
Bda08g01368 | 657 | PANTHER | RNA BINDING PROTEIN | 25 | 643 | - | - | |
Bda08g01368 | 657 | SUPERFAMILY | PABC (PABP) domain | 500 | 644 | IPR036053 | GO:0003723 | |
Bda08g01368 | 657 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 36 | 114 | IPR000504 | GO:0003723 | |
Bda08g01368 | 657 | Gene3D | - | 557 | 640 | - | - | |
Bda08g01368 | 657 | SUPERFAMILY | RNA-binding domain, RBD | 36 | 205 | IPR035979 | GO:0003676 | |
Bda08g01368 | 657 | CDD | RRM2_I_PABPs | 122 | 198 | IPR045305 | - | |
Bda08g01368 | 657 | ProSiteProfiles | Poly(A)-binding protein C-terminal (PABC) domain profile. | 561 | 638 | IPR002004 | GO:0003723 | |
Bda08g01368 | 657 | TIGRFAM | PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family | 37 | 634 | IPR006515 | GO:0003723 | |
Bda08g01368 | 657 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 126 | 194 | IPR000504 | GO:0003723 | |
Bda08g01368 | 657 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 320 | 388 | IPR000504 | GO:0003723 | |
Bda08g01368 | 657 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 38 | 108 | IPR000504 | GO:0003723 | |
Bda08g01368 | 657 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 217 | 285 | IPR000504 | GO:0003723 | |
Bda08g01368 | 657 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 124 | 201 | IPR000504 | GO:0003723 | |
Bda08g01368 | 657 | Gene3D | - | 307 | 408 | IPR012677 | - | |
Bda08g01368 | 657 | Gene3D | - | 205 | 306 | IPR012677 | - | |
Bda08g01368 | 657 | SMART | rrm1_1 | 125 | 197 | IPR000504 | GO:0003723 | |
Bda08g01368 | 657 | SMART | rrm1_1 | 216 | 288 | IPR000504 | GO:0003723 | |
Bda08g01368 | 657 | SMART | rrm1_1 | 37 | 110 | IPR000504 | GO:0003723 | |
Bda08g01368 | 657 | SMART | rrm1_1 | 319 | 391 | IPR000504 | GO:0003723 | |
Bda08g01368 | 657 | CDD | RRM1_I_PABPs | 37 | 116 | - | - | |
Bda08g01368 | 657 | Gene3D | - | 116 | 204 | IPR012677 | - | |
Bda08g01368 | 657 | Gene3D | - | 34 | 115 | IPR012677 | - | |
Bda08g01368 | 657 | Pfam | Poly-adenylate binding protein, unique domain | 569 | 633 | IPR002004 | GO:0003723 | |
Bda08g01368 | 657 | SMART | poly_2 | 573 | 636 | IPR002004 | GO:0003723 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda08g01368 | Bda-Chr8:54274549 | Bda15g00040 | Bda-Chr15:1849466 | 0 | dispersed | |
Bda08g01368 | Bda-Chr8:54274549 | Bda01g01608 | Bda-Chr1:51929890 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda08g01368 | K13126 | - | zju:107419988 | 986.867 |