Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda08g01375 | ATGGAGCTTTTGATGATGATGCATCAGATGGGAAGAACTCCACAATTCAGCGAAACCCTTTGTGATTTTACTGATCTTCCCGGTTCAAGCAACGGTAGTAAACTGCGTGGTTATGCTCCATACTTAATGGAAAATCCGCAAACCTGGCAGGGTTCGTCGCCGTCGGTCAAAGTAGAATCTACTGTTTCATCGATGAAGAGTAGCAGAAAGTGGAGAGAAGATATTCCGACGACGCCATTGGAGAAGCCAGTGAGCTCGGAGGAGGCAATGAGGGAGATGATATTCAGAATAGCAGTAATGCAGCCAATAGAGATAGATCCAGAGGCTGTAAAGCCGCCGAAGAGAAGGAACGTGAAGATATCAAAGGACCCTCAAAGCGTGGCTGCAAGGCATAGGAGAGAGAAAATAAGTGAGAGAATAAGAATACTCCAGAGACTGGTTCCAGGAGGGACAAAGATGGATACGGCTTCCATGCTGGAGGAGGCAGTTCACTACGTCAAGTTTTTGAAGACGCAAGTCCAGTCCTTGGAAGGGGCAGAAGGCAGTAGACCTAATGGAATCGGGTACCCTATTGGGATAGCGTCTGGTAGTGACAATGAGACTAACTCTACGCACTATCACAATTCTAATCCTAGCTAG | 639 | 46.95 | MELLMMMHQMGRTPQFSETLCDFTDLPGSSNGSKLRGYAPYLMENPQTWQGSSPSVKVESTVSSMKSSRKWREDIPTTPLEKPVSSEEAMREMIFRIAVMQPIEIDPEAVKPPKRRNVKISKDPQSVAARHRREKISERIRILQRLVPGGTKMDTASMLEEAVHYVKFLKTQVQSLEGAEGSRPNGIGYPIGIASGSDNETNSTHYHNSNPS | 212 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 54326517 | 54327155 | + | Bda030429.1 | Bda08g01375 | 12231 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda08g01375 | 212 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 124 | 178 | IPR036638 | GO:0046983 | |
Bda08g01375 | 212 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 61 | 202 | IPR045843 | GO:0003700|GO:0006355 | |
Bda08g01375 | 212 | MobiDBLite | consensus disorder prediction | 195 | 212 | - | - | |
Bda08g01375 | 212 | Gene3D | - | 119 | 184 | IPR036638 | GO:0046983 | |
Bda08g01375 | 212 | SMART | finulus | 126 | 175 | IPR011598 | GO:0046983 | |
Bda08g01375 | 212 | CDD | bHLH_AtIND_like | 121 | 177 | - | - | |
Bda08g01375 | 212 | Pfam | Helix-loop-helix DNA-binding domain | 130 | 169 | IPR011598 | GO:0046983 | |
Bda08g01375 | 212 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 120 | 169 | IPR011598 | GO:0046983 | |
Bda08g01375 | 212 | MobiDBLite | consensus disorder prediction | 178 | 212 | - | - | |
Bda08g01375 | 212 | PANTHER | BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN | 61 | 202 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda03g00209 | Bda-Chr3:1641488 | Bda08g01375 | Bda-Chr8:54326517 | 3.10E-63 | dispersed | |
Bda05g00578 | Bda-Chr5:53771342 | Bda08g01375 | Bda-Chr8:54326517 | 1.98E-39 | dispersed | |
Bda08g01375 | Bda-Chr8:54326517 | Bda10g00844 | Bda-Chr10:42835826 | 8.86E-31 | dispersed | |
Bda06g00341 | Bda-Chr6:5469902 | Bda08g01375 | Bda-Chr8:54326517 | 5.57E-11 | transposed | |
Bda10g00372 | Bda-Chr10:35118386 | Bda08g01375 | Bda-Chr8:54326517 | 1.32E-40 | transposed | |
Bda01g00569 | Bda-Chr1:32705315 | Bda08g01375 | Bda-Chr8:54326517 | 2.80E-64 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
16335 | PF00010 | HLH | 3.00E-07 | No_clan | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda08g01375 | - | - | pvy:116125694 | 207.223 |