Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g01375 ATGGAGCTTTTGATGATGATGCATCAGATGGGAAGAACTCCACAATTCAGCGAAACCCTTTGTGATTTTACTGATCTTCCCGGTTCAAGCAACGGTAGTAAACTGCGTGGTTATGCTCCATACTTAATGGAAAATCCGCAAACCTGGCAGGGTTCGTCGCCGTCGGTCAAAGTAGAATCTACTGTTTCATCGATGAAGAGTAGCAGAAAGTGGAGAGAAGATATTCCGACGACGCCATTGGAGAAGCCAGTGAGCTCGGAGGAGGCAATGAGGGAGATGATATTCAGAATAGCAGTAATGCAGCCAATAGAGATAGATCCAGAGGCTGTAAAGCCGCCGAAGAGAAGGAACGTGAAGATATCAAAGGACCCTCAAAGCGTGGCTGCAAGGCATAGGAGAGAGAAAATAAGTGAGAGAATAAGAATACTCCAGAGACTGGTTCCAGGAGGGACAAAGATGGATACGGCTTCCATGCTGGAGGAGGCAGTTCACTACGTCAAGTTTTTGAAGACGCAAGTCCAGTCCTTGGAAGGGGCAGAAGGCAGTAGACCTAATGGAATCGGGTACCCTATTGGGATAGCGTCTGGTAGTGACAATGAGACTAACTCTACGCACTATCACAATTCTAATCCTAGCTAG 639 46.95 MELLMMMHQMGRTPQFSETLCDFTDLPGSSNGSKLRGYAPYLMENPQTWQGSSPSVKVESTVSSMKSSRKWREDIPTTPLEKPVSSEEAMREMIFRIAVMQPIEIDPEAVKPPKRRNVKISKDPQSVAARHRREKISERIRILQRLVPGGTKMDTASMLEEAVHYVKFLKTQVQSLEGAEGSRPNGIGYPIGIASGSDNETNSTHYHNSNPS 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 54326517 54327155 + Bda030429.1 Bda08g01375 12231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g01375 212 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 124 178 IPR036638 GO:0046983
Bda08g01375 212 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 61 202 IPR045843 GO:0003700|GO:0006355
Bda08g01375 212 MobiDBLite consensus disorder prediction 195 212 - -
Bda08g01375 212 Gene3D - 119 184 IPR036638 GO:0046983
Bda08g01375 212 SMART finulus 126 175 IPR011598 GO:0046983
Bda08g01375 212 CDD bHLH_AtIND_like 121 177 - -
Bda08g01375 212 Pfam Helix-loop-helix DNA-binding domain 130 169 IPR011598 GO:0046983
Bda08g01375 212 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 120 169 IPR011598 GO:0046983
Bda08g01375 212 MobiDBLite consensus disorder prediction 178 212 - -
Bda08g01375 212 PANTHER BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN 61 202 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00209 Bda-Chr3:1641488 Bda08g01375 Bda-Chr8:54326517 3.10E-63 dispersed
Bda05g00578 Bda-Chr5:53771342 Bda08g01375 Bda-Chr8:54326517 1.98E-39 dispersed
Bda08g01375 Bda-Chr8:54326517 Bda10g00844 Bda-Chr10:42835826 8.86E-31 dispersed
Bda06g00341 Bda-Chr6:5469902 Bda08g01375 Bda-Chr8:54326517 5.57E-11 transposed
Bda10g00372 Bda-Chr10:35118386 Bda08g01375 Bda-Chr8:54326517 1.32E-40 transposed
Bda01g00569 Bda-Chr1:32705315 Bda08g01375 Bda-Chr8:54326517 2.80E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16335 PF00010 HLH 3.00E-07 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g01375 - - pvy:116125694 207.223