Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g00030 TTTTTGTGGTGTTCATGCTTACTTCAGAAGGCTAAACAAGGTAGCAGAAGGTTAATTTGTTCGGCCGCCACAGATACGTTGCCCAAGAAAATTGAAGAATTTGAAATGGATGCACCTAAAGAAATATTTTTGAAGGATTATAAGATACCTGATTACTACTTTGATACAGTGGATTTAAATTTTTCGCTTGGCGAGGAGAAAACAATTGTTAGTTCCAGAATAACAGTGATACCTCGAGTTGAAGGTGGTTCTACTTCTCCTCTGGTTTTGGATGGACAAGAAGTGAAGTTGCTTTCAATTAAAGTCAACAATACAGAGCTTAAGGAGGATGATTACCTATTGAACTCACGCCATCTGAGACTTCTGTCACCACCATCTGGTGCATTTACTTTAGATATTGTTACTGAGCTATTGCCTCAGAAGAACACATCATTAGAGGGACTTTACAAGTCTTCTGGTAATTTTTGCACACAATGTGAAGCGGAAGGCTTCCGTAAAATCACATTTTATCAGCAGGATCGCCCTGATATAATGGCAAAGTACACCTGTCGCATTGAAGCGGATAAGGAGTTATATCCAGTACTTCTCTCTAATGGAAATCTCGTGGATCACGGCGATTTAGAAGGTGGAAGACAATATGTTGTTTGGGAGGATCCTTTTAAAAAACCATGCTATTTGTTTGCTTTAGTTGCTGGACAATTGGTCAGCAGAGATGATGTTTTCATTACAAGATCAGGCAGAAAGGTCTCTCTACGGATATGGACCCCAGCTCAAGATCTGCCCAAGACTGCACATGCCATGTATTCACTTAAGGCGGCTATGAAATGGGATGAGGATGTTTTTGGTCTAGAATATGACCTGGACCTATTCAATATAGTGGCTGTTCCTGATTTTAACATGGGAGCAATGGAAAACAAGAGTTTGAATATCTTCAATTCAAAACTCGTCTTGGCCTCACCAGAAACTGCTACAGATGCAGATTATGCTGCAATATTAGGTGTTATTGGTCATGAGTATTTCCACAACTGGACTGGCAACAGGTTAGTGACCTGTCGTGACTGGTTCCAGCTAAGTTTAAAGGAAGGTCTTACAGTTTTTCGAGATCAGGAATTCTCGTCTGACATGGGAAGCCGGACTGTAGAGCGGATTGCTGATGTTTCAAGACTTCGAAATTATCAGTTTCCACAGGATGCTGGCCCCATGGCTCATCCAGTTAGGCCACATTCATACATTAAGGTTAGCAATTACTTATTTTTGTATAATTACGTCCCAAAATTAATTGGTAGCATAATATATATTTCTACATTTCAGGGAATGGATCTATACTTCAAGAGACATGATGGTCAAGCTGTAACCTGTGAAGACTTTTTTGCAGCCATGCGAGATGCAAATAATGCAAATTTTGCTAACTTCTTGCAATGGTACTCTCAAGCTGGGACACCTCTTGTCAAAGTGACTTCATCTTACGACCCTGATGCTCATACTTTCTCTTTAAAGTTTAGTCAAGTGGTGCCGCCAACCCCTGGGCAGCCAGTTAAAGAACCGATGTTTATACCGGTGGCTTTAGGCTTGCTAGATTCAAAGGGCAAGGACCTGCCTCTTTCAACTGTCTCTCATGATGGGATGCAGCAGTTGGTTTCTGGCAATGATCAGCCAGTTTATTCCACAGTTCTTCGGGTGACCAAAAAAGAAGAAAAATTTGTATTTTCTGATGTGCCTGAGCGGCCAGTTCCATCGCTGTTGCGGGGTTATAGTGCTCCTATCCGTCTCGAATCAGATTTAAGCGACAGTGACATATTTTTCCTTCTTGCCCATGATTCAGACCAGTTTAATCGGTGGGAGGCAGGACAAATACTGGCTCGAAAGTTGATGCTCGGCTTGGTGGCTGACTTCCAACAAAATAAGCCATTGACGCTTAGTTCAAAGTTTGTGAATGGGATGAGAAGCATACTCTGTGACTCAAGCTTAGATAAAGAGTTCATTGCAAAGGCAATAACTCTACCTGGTGAAGGAGAAGTAATGGACATGATGGACATTGCAGATCCTGATGCAGTCCATGCCGTTCGATCATTCATACGGAAGCAGCTAGCTTGTGAGCTCAAAGCGGAGCTTCTTTCCACTGTCGAACACAACAGAAGCTCGGAACACTATGAGTTCAACCATGCTGACATGGCTAGACGCGCCCTTAAAAATACGGCATTGTCTTATCTTGCATCGCTTGAAGAGGCGGAGTTTGCAGATCTTGCTCTTCATGAGTACAAAACGGCCACAAATATGACTGAACAATTTGCAGCTTTAGCAGCCATAGCCCAGAATCCGTGTAAAACCCGTGATGATGTTCTAGCCGATTTCTATGACAAGTGGCAGCATGACTTTTTAGTTGTGAACAAATGGTTTGCTCTTCAAGCCATGTCTGACATTCCTGGAAATGTAGAACATATTGGGAAGCTCCTAAACCACCCAGCTTTTGATCTGCGAAATCCGAACAAAGTATACTCCCTCATTGGAGGTTTTTGTGGGTCTCCAGTGAATTTCCATGCAAAGGATGGATCAGGCTATAAGTTTTTGGGAGAGAAAGTTCTTCAACTTGACAAAATAAATCCTCAGGTTGCATCCCGAATGGTCTCCGCATTCTCAAGATGGAAACGATACGACGAGACACGACAAAAACTGGCAAAGGCACAGCTTGAGATGATAATGGCTTGCAATGGACTGTCTGAAAATGTGTTTGAAATTGCCTCCAAAAGTTTAGCTGCT 2757 42.29 FLWCSCLLQKAKQGSRRLICSAATDTLPKKIEEFEMDAPKEIFLKDYKIPDYYFDTVDLNFSLGEEKTIVSSRITVIPRVEGGSTSPLVLDGQEVKLLSIKVNNTELKEDDYLLNSRHLRLLSPPSGAFTLDIVTELLPQKNTSLEGLYKSSGNFCTQCEAEGFRKITFYQQDRPDIMAKYTCRIEADKELYPVLLSNGNLVDHGDLEGGRQYVVWEDPFKKPCYLFALVAGQLVSRDDVFITRSGRKVSLRIWTPAQDLPKTAHAMYSLKAAMKWDEDVFGLEYDLDLFNIVAVPDFNMGAMENKSLNIFNSKLVLASPETATDADYAAILGVIGHEYFHNWTGNRLVTCRDWFQLSLKEGLTVFRDQEFSSDMGSRTVERIADVSRLRNYQFPQDAGPMAHPVRPHSYIKVSNYLFLYNYVPKLIGSIIYISTFQGMDLYFKRHDGQAVTCEDFFAAMRDANNANFANFLQWYSQAGTPLVKVTSSYDPDAHTFSLKFSQVVPPTPGQPVKEPMFIPVALGLLDSKGKDLPLSTVSHDGMQQLVSGNDQPVYSTVLRVTKKEEKFVFSDVPERPVPSLLRGYSAPIRLESDLSDSDIFFLLAHDSDQFNRWEAGQILARKLMLGLVADFQQNKPLTLSSKFVNGMRSILCDSSLDKEFIAKAITLPGEGEVMDMMDIADPDAVHAVRSFIRKQLACELKAELLSTVEHNRSSEHYEFNHADMARRALKNTALSYLASLEEAEFADLALHEYKTATNMTEQFAALAAIAQNPCKTRDDVLADFYDKWQHDFLVVNKWFALQAMSDIPGNVEHIGKLLNHPAFDLRNPNKVYSLIGGFCGSPVNFHAKDGSGYKFLGEKVLQLDKINPQVASRMVSAFSRWKRYDETRQKLAKAQLEMIMACNGLSENVFEIASKSLAA 919
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 442796 449563 - Bda034071 Bda09g00030 12280

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g00030 919 Gene3D - 479 592 IPR038438 -
Bda09g00030 919 Pfam Domain of unknown function (DUF3458) Ig-like fold 479 592 IPR035414 -
Bda09g00030 919 Pfam Domain of unknown function (DUF3458_C) ARM repeats 596 918 IPR024601 -
Bda09g00030 919 Gene3D - 594 918 IPR037144 -
Bda09g00030 919 Gene3D tricorn interacting facor f3 domain 49 234 IPR042097 -
Bda09g00030 919 PANTHER BNAC06G01820D PROTEIN 10 422 - -
Bda09g00030 919 PANTHER BNAC06G01820D PROTEIN 437 919 - -
Bda09g00030 919 Gene3D - 236 319 - -
Bda09g00030 919 PANTHER - 10 422 IPR012779 GO:0008270
Bda09g00030 919 PANTHER - 437 919 IPR012779 GO:0008270
Bda09g00030 919 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 244 485 - -
Bda09g00030 919 SUPERFAMILY Leukotriene A4 hydrolase N-terminal domain 41 232 IPR042097 -
Bda09g00030 919 Gene3D Neutral Protease Domain 2 320 478 IPR027268 -
Bda09g00030 919 CDD M1_APN 46 476 - -
Bda09g00030 919 Pfam Peptidase M1 N-terminal domain 67 226 IPR045357 -
Bda09g00030 919 TIGRFAM pepN_proteo: aminopeptidase N 46 917 IPR012779 GO:0008270
Bda09g00030 919 Pfam Peptidase family M1 domain 268 473 IPR014782 GO:0008237|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g00030 K01256 pepN; aminopeptidase N [EC:3.4.11.2] - tcc:18606548 1528.84
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g01216 Bda-Chr4:62748995 Bda09g00030 Bda-Chr9:442796 0 dispersed
Bda09g00030 Bda-Chr9:442796 Bda12g01063 Bda-Chr12:42375383 1.59E-15 dispersed
Bda09g00030 Bda-Chr9:442796 Bda09g00031 Bda-Chr9:455935 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g301 . . . . . . Bma07g01667 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00268 . . . . . Bda09g00030 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004484 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 2 1 2 1 1 1 1 2 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda09g00030 Bda_Chr09 FPKM 0.134752 0.055692 0.326941 0.046764 0.942862 1.665276 1.637073 0.253221 0.953212