Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g00033 ATGGAAGGATGGTCGGTTTTATCTAATGATGCTTATAACTTTCCTGATAATGGCGGTTTCTATCATCGTGATGGGGATTGTGGAGCTATTGATCACTTGGTTGAAATAAACGATGTTTCCAATGATGATTTTCATAATAACACTGCTAAAGATCGTTCCTTGTTTGATCAAGTTTTTTCTCTCTTCCTGAAAGAAAGTGGTAATAGAGGTACTGAAAGACCTACACCAGCTCTGCTGGGAGATGGAGGTTCTGTGGATTTTTCAAACTGTTTTTGTGCAGTGAGAGATAGAGGTGGATATTTCGTGGTTTCAAAAATGGGACTCTGGTCTATGGTGGTGGGAGAAATGGGTTTGAATTTGAAATGGTTGGAAATGGAGAAGAATGGATCCGTTAGGAATTTCCATTTGTTTTCCTTTGAATTGGAAAACGAGATTACCGGATTGTTCTACAATGGTTTAGTAGATAAGGACATTGAGTTTATGAAGCTAATGATGATGAAGATCGCGCTAGATTCAAAAACTGGAAGAGGGATTCAAAATTTCTCTACTAAACACGATGTTTGTAGGATCCAGCTAAATGGCAAAAGAACCCGTGTTGATCATGACAAAGTTTGCGATGATGACGATAAATTAGGTTGTCTTAATGTTTCTGTTTGTATGAATGAGAAGGAATATAACTCTCGCTTGAGAAAGCAAGAGTCTCTCCCGGAAATGTTGAAGTGGGTGATCCAAGCTGCAAAGCGTCCGGTTGATCCTTCAATTGGTGAAATACCGGAGCCATCTAAATGGAAGGAGTATCAAGGAAATGAATTCTGGTTTCAGGCAATCACCGCGAGGAACATACTACTCTTGAAAAGGCATAATGATTCAAGCATTGATGACACTCTCTTACAGAAGAAGATGAAGATGCATCCATCAATGTACGAGGATGATGTTCGTCCTCGTCAGTCCACTGGTGCCGCTTCTGAGAGCGACCCTAAATGGCTTGGCACTAGAGTATGGCCTTTTCAATATAATGAAAGTGATCACACTGAAAAACAAGAAACTGAAGCTGGATTGGGGTCCGTGTTTTATCAATGGAGATTTCATCAGATGCGGTGA 1101 40.24 MEGWSVLSNDAYNFPDNGGFYHRDGDCGAIDHLVEINDVSNDDFHNNTAKDRSLFDQVFSLFLKESGNRGTERPTPALLGDGGSVDFSNCFCAVRDRGGYFVVSKMGLWSMVVGEMGLNLKWLEMEKNGSVRNFHLFSFELENEITGLFYNGLVDKDIEFMKLMMMKIALDSKTGRGIQNFSTKHDVCRIQLNGKRTRVDHDKVCDDDDKLGCLNVSVCMNEKEYNSRLRKQESLPEMLKWVIQAAKRPVDPSIGEIPEPSKWKEYQGNEFWFQAITARNILLLKRHNDSSIDDTLLQKKMKMHPSMYEDDVRPRQSTGAASESDPKWLGTRVWPFQYNESDHTEKQETEAGLGSVFYQWRFHQMR 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 480857 482881 + Bda030553.1 Bda09g00033 12283

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g00033 366 CDD ARID 51 118 - -
Bda09g00033 366 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 35 315 - -
Bda09g00033 366 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 317 346 - -
Bda09g00033 366 Gene3D - 36 136 IPR036431 GO:0003677
Bda09g00033 366 ProSiteProfiles ARID domain profile. 49 146 IPR001606 GO:0003677
Bda09g00033 366 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 35 315 - -
Bda09g00033 366 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 317 346 - -
Bda09g00033 366 SUPERFAMILY ARID-like 46 119 IPR036431 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g00033 - - - qsu:111986067 203.756
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g13 . . . . . . Bma07g01663 . . Cmo16g00656 . . . . . Cpe14g00511 . . . . . . . . Cla07g00785 Cam07g0845 Cec07g0897 Cco07g0880 Clacu07g0820 Cmu07g0824 Cre07g1181 . . Cone6ag0789 Cone9ag0791 . . . Cme07g01639 . . . Bda09g00033 . . . . . . . . Cma16g00601 . . . . . . . . . . . . . . . . . . . . Chy07g01224 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008781 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 2 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda09g00033 Bda_Chr09 FPKM 10.367009 10.297798 8.890397 8.423403 19.336409 16.685371 18.022924 5.594763 5.319771