Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g00034 ATGGCTAGAGAGCTCTGTGAAGACAAATCCAGAAACACAGTTTCTTCTACGGGCTTTTGCTATTCGTCGGCGGCAGCCGGCAACCCGAGTTTCCAGACCCACTTCACAAACCAGATCCAGGAGTACGCGCCCAGCCCAGCTGAGATCTTCAGCTTGCCGACAAATATGGAGATGGTAGGGTTTTCAAAGAATCTCCATCAGCAAACCGGAGGTAGCTCAGTTCAATGGAGAGGATTTTCTACAAAGTCTAACTTTGGGTCTTCCTCTTCAAAAACGATCAACGAATCGTCCAGTTTCTACGACCATGATTACGATAAGCAAGACTTTACCAGCACCAGTGAGAATCTAATGGCTGGAGTTGGACCAGAAACTGGAGCTTGGCAAGAGAATAGATTCTTCCTCGATGATTCTTCTTTAAGGTGTGTTCTTAATCGCCAAGGAAACGATAGGCCTAGCCATGGCCTCTCGCTTTCTCTTTCTTCAGATAATCCTTCTGGTATCGGATTACATTCGTTTGTTGTACTGAGGCAAACCCAAGAAGCTGATGAAAGATTTGTTTCTTCTATGACTAGGAATAATGGGTTCTTCGCAAAATCCCACAATATTCAACAGCAAGAACAGATTTTCCGAGATGGGTTGGTCGGAAAAGTTGCAGATCTTCACCAACACGGCCAGTTTCACCTTGGGAACTCGAAATACTTGATTGCAACGCAGCAGCTTTTAAATGAATTCTGCAGCCTTGGATTGAGGCATGGTGATGGAGAGAAGAAGGGTCATAGAACCAAACAGTGGGTTGAAGAAAATGCTACTGCTTCATTGAGGAAGCAGTCTCTTCAATCCCTTGATTTTATCGAATTACAGAAGAGAAAAACAAGGCTGTTTTCCATGATGGAAGAGCTGGAGCGTAGATACAGGCACTACTGCGACCAAATGAAAATGGTGGCGTCTTCGTTTGAAGCAGTGGCCGGAGAGGGAGCTTCGAATGTGTATTCCGCTTTGGCCTGCAAGGCTTTGTCGAGGCATTTCAGGTGTTTGAAAGATGGGATTGTGACGCAGATTCAGGCTGTGAAGAAGGCGATGGGAGAGAAAGATCAGCAAGCTTCAGTGCCGGGGGGGTCAAAGGGTGAAACGCCGAGGCTGTGCATTCTGGATCAGACGCTTAGACGGCAAAGGGCTTTCCAGCAGATGAGCTTGATGGAGAGCCATCCATGGCGGCCCCAACGTGGCCTTCCTGAACGATCCGTTTCCATTCTCCGAGCTTGGCTGTTCGAACACTTTCTTCACCCGTATCCAAGCGACGTAGATAAACATATTCTAGCCCGCCAAACTTCTCTCTCAAGAAGCCAGGTTTCCAACTGGTTCATCAATGCAAGAGTGAGGCTGTGGAAGCCAATGGTGGAAGATATGTACTTGGAAGAAGTAAAGGAGCAAGAAAACAACTTGACCTCCTCCGACGGAGGCATTGACGTCGACAACAGAGGAAGAGCACGGCCGGAAGATCAAAAGCCGACCGCCGACCAACTCCTTAGAATCAACTCCGACTGCCTTTCCTCCATCATCAACAATCCACCAAAAAATGACACGAAACCCTCCAAAACCCTCCAAAACCACCACCACCAACAACAGCAGCAACAAAATTTCAGCTCATTTGGGACGATGGAGCTTGATTTCTCTTCCTACAATCACCAATCATCCGTAGCTGTTTCCTACGCAAGTGACAGTCAAGTAAATCATAATTTCAATGGCGGCGGGGGCGGGGGAGGTGTTTCGTTGACACTAGGGCTGCAACAGCACGGCGGTAATGGGTCCGGGAGCTTAGCATTTTCTTCCCCACCTCAAGCTAACTCTCTCTTCTACCCTAGAGATTCCATGGAAGAATGCCAACCAGCTGTTCACTACTCTCTTTTTGATGGAGAAGCTCCGAATTTGCCTTACAGAAACTTAATGGAGGCCCAAATGTTCCACGATTTGGCTGGATAA 1980 47.58 MARELCEDKSRNTVSSTGFCYSSAAAGNPSFQTHFTNQIQEYAPSPAEIFSLPTNMEMVGFSKNLHQQTGGSSVQWRGFSTKSNFGSSSSKTINESSSFYDHDYDKQDFTSTSENLMAGVGPETGAWQENRFFLDDSSLRCVLNRQGNDRPSHGLSLSLSSDNPSGIGLHSFVVLRQTQEADERFVSSMTRNNGFFAKSHNIQQQEQIFRDGLVGKVADLHQHGQFHLGNSKYLIATQQLLNEFCSLGLRHGDGEKKGHRTKQWVEENATASLRKQSLQSLDFIELQKRKTRLFSMMEELERRYRHYCDQMKMVASSFEAVAGEGASNVYSALACKALSRHFRCLKDGIVTQIQAVKKAMGEKDQQASVPGGSKGETPRLCILDQTLRRQRAFQQMSLMESHPWRPQRGLPERSVSILRAWLFEHFLHPYPSDVDKHILARQTSLSRSQVSNWFINARVRLWKPMVEDMYLEEVKEQENNLTSSDGGIDVDNRGRARPEDQKPTADQLLRINSDCLSSIINNPPKNDTKPSKTLQNHHHQQQQQQNFSSFGTMELDFSSYNHQSSVAVSYASDSQVNHNFNGGGGGGGVSLTLGLQQHGGNGSGSLAFSSPPQANSLFYPRDSMEECQPAVHYSLFDGEAPNLPYRNLMEAQMFHDLAG 659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 536688 539392 + Bda030554.2 Bda09g00034 12284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g00034 659 Coils Coil 283 303 - -
Bda09g00034 659 SUPERFAMILY Homeodomain-like 405 470 IPR009057 -
Bda09g00034 659 MobiDBLite consensus disorder prediction 490 504 - -
Bda09g00034 659 SMART prehox3 222 351 IPR006563 -
Bda09g00034 659 MobiDBLite consensus disorder prediction 519 546 - -
Bda09g00034 659 Pfam Homeobox KN domain 421 460 IPR008422 GO:0003677|GO:0006355
Bda09g00034 659 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 609 - -
Bda09g00034 659 PANTHER HOMEOBOX PROTEIN BEL1 HOMOLOG 1 609 - -
Bda09g00034 659 MobiDBLite consensus disorder prediction 477 506 - -
Bda09g00034 659 Pfam Associated with HOX 228 349 IPR006563 -
Bda09g00034 659 SMART HOX_1 404 468 IPR001356 GO:0003677
Bda09g00034 659 Gene3D - 407 469 - -
Bda09g00034 659 ProSiteProfiles 'Homeobox' domain profile. 401 464 IPR001356 GO:0003677
Bda09g00034 659 CDD homeodomain 404 465 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda09g00034 Bda-Chr9:536688 Bda01g00515 Bda-Chr1:32123874 1.12E-73 dispersed
Bda14g01214 Bda-Chr14:12216414 Bda09g00034 Bda-Chr9:536688 3.26E-93 transposed
Bda04g00315 Bda-Chr4:46953423 Bda09g00034 Bda-Chr9:536688 3.27E-90 transposed
Bda07g00489 Bda-Chr7:6125759 Bda09g00034 Bda-Chr9:536688 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16338 PF07526 POX 5.20E-40 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g00034 - - tcc:18606572 826.624