Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g00042 GACGCTAGAGGAAATGATGTCGATCTCAGTTCTTACAGAGGAAAGGCCCTCTTGATCGTCAATGTTGCCTCTCAATGTGGCTTGACCAATTCAAATTACAAAGAACTGAGTCAATTGTACGAAAAATACAAAAATCAAGGACTGGAGATTCTGGCATTTCCATGCAACCAATTTGGAGGCCAAGAGCCAGGGAGTAACGAACAGATAGTGGAGTTTGCTTGTACTCGCTTTAAGGCCGAGTATCCCATCTTTGATAAGGTGAATGTGAATGGCGAGGAAGCTGCTCCACTGTACAAGTTCTTGAAATCAAGCAAAGGTGGGTGGCTTGGAGACGGCATCAAGTGGAATTTCTCTAAGTTCTTGGTGGACAAAGACGGGATGGTCGTCAACCGATATGCTCCAACAACATCCCCGCTTAGCATTGAGGTGAGTCTAGCAATTTGGAGTCACTCTTTGTTATGA 462 44.81 DARGNDVDLSSYRGKALLIVNVASQCGLTNSNYKELSQLYEKYKNQGLEILAFPCNQFGGQEPGSNEQIVEFACTRFKAEYPIFDKVNVNGEEAAPLYKFLKSSKGGWLGDGIKWNFSKFLVDKDGMVVNRYAPTTSPLSIEVSLAIWSHSLL 153
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 624945 625983 + Bda030564.1 Bda09g00042 12292

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g00042 153 PRINTS Glutathione peroxidase family signature 48 64 IPR000889 GO:0004602|GO:0006979
Bda09g00042 153 PRINTS Glutathione peroxidase family signature 12 29 IPR000889 GO:0004602|GO:0006979
Bda09g00042 153 PRINTS Glutathione peroxidase family signature 113 122 IPR000889 GO:0004602|GO:0006979
Bda09g00042 153 PIRSF Glutathion_perox 1 150 IPR000889 GO:0004602|GO:0006979
Bda09g00042 153 Pfam Glutathione peroxidase 2 102 IPR000889 GO:0004602|GO:0006979
Bda09g00042 153 Gene3D Glutaredoxin 1 147 - -
Bda09g00042 153 CDD GSH_Peroxidase 1 142 IPR000889 GO:0004602|GO:0006979
Bda09g00042 153 SUPERFAMILY Thioredoxin-like 2 144 IPR036249 -
Bda09g00042 153 PANTHER GLUTATHIONE PEROXIDASE 1 145 IPR000889 GO:0004602|GO:0006979
Bda09g00042 153 PANTHER GLUTATHIONE PEROXIDASE 1 145 - -
Bda09g00042 153 ProSitePatterns Glutathione peroxidases signature 2. 51 58 IPR029760 -
Bda09g00042 153 ProSiteProfiles Glutathione peroxidase profile. 1 153 IPR000889 GO:0004602|GO:0006979
Bda09g00042 153 ProSitePatterns Glutathione peroxidases active site. 14 29 IPR029759 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g00042 K00432 gpx, btuE, bsaA; glutathione peroxidase [EC:1.11.1.9] - psom:113274608 269.24
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g01027 Bda-Chr4:61191518 Bda09g00042 Bda-Chr9:624945 4.54E-50 dispersed
Bda06g01231 Bda-Chr6:42396108 Bda09g00042 Bda-Chr9:624945 1.14E-78 dispersed
Bda09g00042 Bda-Chr9:624945 Bda13g00281 Bda-Chr13:3541914 1.42E-81 dispersed
Bda09g00042 Bda-Chr9:624945 Bda09g00043 Bda-Chr9:629140 6.11E-102 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g330 . . . . . . Bma07g01647 . . . Cma02g01460 . . . . . . . . . . . . . . . . . . . . . . Cone6ag0773 Cone9ag0779 . Csa05g00289 Chy09g01217 . . Blo19g00321 . Bda09g00042 . . . Bma12g00393 . Cmo02g01495 . . . . . . . Bhi12g00245 . . . . . . . . . . . . . Lsi09g00266 . . Cme09g01754
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000163 11 8 6 9 6 6 7 6 6 5 4 6 8 5 6 8 6 11 3 6 6 7 6 5 5 6 5 14 6 5 198
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda09g00042 Bda_Chr09 FPKM 3.851014 2.281101 4.458617 4.002451 1.481631 1.544847 1.798613 2.369659 2.990678