Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g00049 ATGGCTACCCAAGATCTGGAGCGAGGTGGGGGTAAGAATAGAGGGACCAATTCGGCGTCTTACTACGTAGAGAGCTTGGAGAAGCAATGGACTTCGTGGCTGATTCCGATGTTCGTGGTGGCTAACGTTGCTGTGTTCATTATTGTGATGTATATCAACGACTGCCCCAAGAACAATATAGGGTTCGGAGGGGAGTGTGTGGCGCAATTTTTGGGCAGGTTTTCGTTCCAGCCTCTCAAGGAGAATCCTCTTTTTGGCCCGTCTTCTTCTACATTTACAGTTGGGGTGGTGATGCTGTTCAGAGGAGAGAATGGGAATGAGCATTGCAGCTGGTGTCATTACTTGAGCTGTGTTCCTACTTCTCACTGGGATTGTGACAATTGA 384 48.44 MATQDLERGGGKNRGTNSASYYVESLEKQWTSWLIPMFVVANVAVFIIVMYINDCPKNNIGFGGECVAQFLGRFSFQPLKENPLFGPSSSTFTVGVVMLFRGENGNEHCSWCHYLSCVPTSHWDCDN 127
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 714590 716312 + Bda030572.1 Bda09g00049 12299

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g00049 127 PANTHER RHOMBOID-RELATED 1 92 IPR002610 GO:0004252|GO:0006508|GO:0016021
Bda09g00049 127 PANTHER RHOMBOID-LIKE PROTEIN 2 1 92 - -
Bda09g00049 127 PANTHER RHOMBOID-RELATED 92 125 IPR002610 GO:0004252|GO:0006508|GO:0016021
Bda09g00049 127 PANTHER RHOMBOID-LIKE PROTEIN 2 92 125 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g00049 - - - zju:107429973 144.436
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00645 Bda-Chr6:8943011 Bda09g00049 Bda-Chr9:714590 1.37E-14 dispersed
Bda09g00049 Bda-Chr9:714590 Bda15g00736 Bda-Chr15:10836669 4.71E-18 dispersed
Bda09g00049 Bda-Chr9:714590 Bda06g00673 Bda-Chr6:9371756 3.33E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g376 . . . . . . . Bma14g00584 . Cmo16g01061 . . . . . . Cpe05g00311 . . . . . . . . . . . . . . . . . . . . . . . . . Bda09g00049 . . . . . . . . . . . . . Bhi12g00209 . . Lac11g2129 Hepe06g1577 . Lcy12g1689 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000228 6 5 4 5 7 5 5 5 5 5 4 5 7 5 5 6 5 6 6 5 5 5 5 5 5 4 5 12 7 4 163
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda09g00049 Bda_Chr09 FPKM 173.338791 177.974182 139.2715 142.840256 234.904373 243.672897 239.386459 181.576721 198.082886