Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g00062 ACTGAATATCTTTCCAACATGTCGTCGTATCAGGATCAGGAGTTCGATCAGAACGACGACGGAGCCAACTCCGATCTCAGCACCAGCGCTGGCGACCCGGAAGAAGACCCTCCGACGACGGAGCTCAGAAATTATAAGATGGCTTTTCGAGCTGCCCCGATGAAAGAAGAACCGGTCGATTCCGACCTACTATCGGACCACGATGAGAAGACGAAGCTGCCGCCGGAACCATCCATTGGGGTGCATCCCGTCGCGATGAAGCTGCCTTTGCAGATGCCGGTGAGTACAACTCGGAGGTCTACGAAGGACCGGCACACCAAGGTAGAGGGACGAGGCCGGAGGATCCGAATACCCGCTACCTGCGCCGCCCGAATATTTCAGCTGACCCGAGAATTGGGTCACAAATCGGACGGTGAGACCGTCCGGTGGCTTCTTGAACACGCGGAGCAAGCGATAATTGAGGCCACAGGAACCGGAACTGTGCCAGCCATCGCCGTCTCCGTAGGTGGGACCCTTAAAATCCCGACCACCGCTAACTCCGACGGCCTGAGCAATCACGAGAATAAAAAGAGAAAGCGGCCATCGAACTCTGAGTTCTTCGACATAAACGAAGCGGTTTCACACTCAACCGGGTTCGCTCCAGTCCAACCGGTAACCCCTACAGCGGCGATTCCACAGGGTCTTTTACCAGTATGGGCCGTGGGAAACGCCGGGATGATGGTTCCCGCTAACGCCTTCTGGATGATTCAGGCTGCGCCAACTCCAACAGGCCAGGTTATCGCCGCCGGACCGTCTAACCAAAACCCTCAGATATGGACCATATCGCCGACTGTAACGCAGGTTTTCAACATGTCTGCTAGACCCATTTCCTCTTTCGTCTCAAATCAGCCAGTAGGGGTAACTGTTCCGTCTGGGATCGAGATCCGGCCGCCAGCGCTCTCCTTCTGCAACAGCTTGTCGAGTTCAGCCGTTAGCACGAGCACTTCCGGGCCCAGAACGGCTGAGAAATCAGCTACTATGGCGGCGCCTAGCGTGAGCTCTAGTGGCAGCGGAAATGGCGGGCCCAAAGCTCAGATGCTTAGGGATTTTTCATTGGAGATTTTTGACAAGCAGGAGTTACAGTTTATGAGTAGGAATGGGAATAACCAGAAGACACAATCTTCTTTGAAACCATGA 1176 54.68 TEYLSNMSSYQDQEFDQNDDGANSDLSTSAGDPEEDPPTTELRNYKMAFRAAPMKEEPVDSDLLSDHDEKTKLPPEPSIGVHPVAMKLPLQMPVSTTRRSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEQAIIEATGTGTVPAIAVSVGGTLKIPTTANSDGLSNHENKKRKRPSNSEFFDINEAVSHSTGFAPVQPVTPTAAIPQGLLPVWAVGNAGMMVPANAFWMIQAAPTPTGQVIAAGPSNQNPQIWTISPTVTQVFNMSARPISSFVSNQPVGVTVPSGIEIRPPALSFCNSLSSSAVSTSTSGPRTAEKSATMAAPSVSSSGSGNGGPKAQMLRDFSLEIFDKQELQFMSRNGNNQKTQSSLKP 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1242750 1243925 + Bda030586.1 Bda09g00062 12312

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g00062 391 MobiDBLite consensus disorder prediction 323 361 - -
Bda09g00062 391 MobiDBLite consensus disorder prediction 323 354 - -
Bda09g00062 391 Pfam TCP family transcription factor 100 189 IPR017887 -
Bda09g00062 391 ProSiteProfiles TCP domain profile. 101 155 IPR017887 -
Bda09g00062 391 MobiDBLite consensus disorder prediction 175 197 - -
Bda09g00062 391 MobiDBLite consensus disorder prediction 1 81 - -
Bda09g00062 391 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 12 386 IPR005333 GO:0003700
Bda09g00062 391 MobiDBLite consensus disorder prediction 1 34 - -
Bda09g00062 391 MobiDBLite consensus disorder prediction 53 75 - -
Bda09g00062 391 PANTHER TRANSCRIPTION FACTOR TCP9-LIKE 12 386 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g00062 - - - zju:107405250 443.736
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda07g00504 Bda09g00062 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda09g00062 Bda-Chr9:1242750 Bda10g00932 Bda-Chr10:43698140 4.27E-32 dispersed
Bda05g00044 Bda-Chr5:2844815 Bda09g00062 Bda-Chr9:1242750 5.38E-30 transposed
Bda07g00504 Bda-Chr7:6434007 Bda09g00062 Bda-Chr9:1242750 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g416 . . . . . . Bma07g01629 Bma14g00579 . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0740 Cone9ag0744 . . . . . Blo19g00306 Bda07g00504 Bda09g00062 Bpe08g01471 Bpe11g00690 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004457 3 1 2 3 3 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16342 PF03634 TCP 3.10E-28 No_clan Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda09g00062 Bda_Chr09 FPKM 11.826731 11.991588 8.256973 7.929838 12.079632 12.818731 12.728838 11.352531 10.237879