Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bda09g00064	ATGCAAGAACCAGGCTTAGGAATGATCGCCGCCGCAGCAGGTTGTGGTTCTGGTCTGAGCGGCGATTTATCAGTCTCCGGCGACCACCGTCACCGGCAGGTCAAAGCTGAGATAGCCGGTCATCCAATATACGAGCAGCTTCTCGCCGCCCACGTGGCCTGTCTTCGGGTAGCTACCCCTATCGATCAGTTGCCGCTCATAGACGCGCAGTTGGCGCAATCAGAACATCTTTTACGATCTTATTCGGAGAACTCGCAGCATCACCATGGCCATTCTCTATCCCCCCATGAGCGCCAAGAGCTTGACAACTGCTTGGCACAGTATCTGTTAGTTTTGTGTTCTTTTAAAGAACAGCTTCAACAACATATTAGAGTTCATGCTGTTGAAGCTGTCATGGCCTGCCGTGAAATTGAAAACACTTTACAAGCTATCACTGGAGCTAGTCTTGGAGAAGGTACAGGAGCAACAATGTCAGATGAAGAAGAAGATGTGCAGATGGATTTCTCGTTGGACCCATCTGGTGCAGATGGCCATGACATGATGGGTTTTGGCCCTCTTCTTCCTTCCGACTCTGAAAGATCTTTAATGGAGAGGGTTCGCCAAGAACTCAAGATTGAGTTGAAGCAGTTAAACTATCATCTGAATTTGTTGCAGGGTTTTAAGTCTAGAATTGAAGATGTTAGAGAAGAAATACTAAGGAAAAGAAGGGCTGGAAAATTACCCAGTGATACAACTACTGTGCTAAAAACTTGGTGGCAACAGCATTCTAAGTGGCCTTACCCAACTGAAGATGATAAGGCAAAGCTAGTGGAGGAGACAGGATTGCAGTTGAAACAAATAAACAACTGGTTCATCAACCAAAGAAAGAGAAATTGGCATAGCAATTCTCAATCTGTGACATCCTTAAAGTCCAAGCGCAAGAGATAA	927	45.85	MQEPGLGMIAAAAGCGSGLSGDLSVSGDHRHRQVKAEIAGHPIYEQLLAAHVACLRVATPIDQLPLIDAQLAQSEHLLRSYSENSQHHHGHSLSPHERQELDNCLAQYLLVLCSFKEQLQQHIRVHAVEAVMACREIENTLQAITGASLGEGTGATMSDEEEDVQMDFSLDPSGADGHDMMGFGPLLPSDSERSLMERVRQELKIELKQLNYHLNLLQGFKSRIEDVREEILRKRRAGKLPSDTTTVLKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR	308

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
9	1265540	1268983	-	Bda030588.1	Bda09g00064	12314

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bda09g00064	308	PANTHER	HOMEOBOX PROTEIN KNOTTED-1-LIKE 7	2	308	-	-
	Bda09g00064	308	Gene3D	-	230	304	-	-
	Bda09g00064	308	PANTHER	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	2	308	-	-
	Bda09g00064	308	SMART	KNOX1_2	32	76	IPR005540	GO:0003677\|GO:0005634
	Bda09g00064	308	SMART	KNOX2_2	91	146	IPR005541	GO:0003677\|GO:0005634
	Bda09g00064	308	ProSiteProfiles	'Homeobox' domain profile.	231	294	IPR001356	GO:0003677
	Bda09g00064	308	CDD	homeodomain	234	295	IPR001356	GO:0003677
	Bda09g00064	308	Pfam	Homeobox KN domain	251	290	IPR008422	GO:0003677\|GO:0006355
	Bda09g00064	308	SMART	HOX_1	233	298	IPR001356	GO:0003677
	Bda09g00064	308	Pfam	KNOX2 domain	94	145	IPR005541	GO:0003677\|GO:0005634
	Bda09g00064	308	SUPERFAMILY	Homeodomain-like	233	298	IPR009057	-
	Bda09g00064	308	Pfam	KNOX1 domain	34	75	IPR005540	GO:0003677\|GO:0005634

Event-related genes

Select	Gene_1	Gene_2	Event_name
	Bda07g00506	Bda09g00064	BCT

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Bda01g00755	Bda-Chr1:34791738	Bda09g00064	Bda-Chr9:1265540	2.15E-41	dispersed
	Bda09g00064	Bda-Chr9:1265540	Bda01g00605	Bda-Chr1:33054749	2.10E-25	dispersed
	Bda07g00506	Bda-Chr7:6463810	Bda09g00064	Bda-Chr9:1265540	0	wgd

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	16343	PF03791	KNOX2	5.10E-16	No_clan	Bda	TF

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bda09g00064	-		-	csv:101206054	508.064