Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g00067 ATGGTGAGGGGAAGAACTCAGATGAAGAGGATAGAGAATGCAACGAGCCGGCAAGTAACTTTTTCAAAGCGTAGAAATGGGCTGCTGAAGAAAGCCTTCGAGCTATCAGTTCTTTGTGATGCTGAAGTTGCACTCATCATCTTCTCCACCAGAGGAAAACTCTATGAATTTTCCAGTCGCAGCATGCATAAGACGATAGATCGCTATAAGAACAGAACCAAGGAACTAGAGCACGGGAAAAAAGCTATTCAAGAAAATATCCAGGAAGAAAAGGATGATCAAGACATTATTAGCATGGCGAAGAAGATTGAGAATCTCGAATCTTCTAAACGAAAACTCATGGGAGAGGGCTTGGATTCATGTTCTATTGACGAACTACAACAAACAGAAAAGCAATTGGAGAAAAGCTTGAGCAAGATTAGGACAAAAAAGTATCAAATACTGAGGGAGCAGATTGAGAAGCTTAAGGAACAGGAGGGCAAATTAATAGAAGAAAATTCAAAATTACGCGCTAAGAGTGGAATTCAACCATCGAACTTAGAAGGAAGGAGAGAAGGAGAAAGGCTGGGGAGGTTAAGTTTGGAAGTGGAGACAGGATTGTTCATAGGACCACCCGAAAGACGTACATTCCCGACAACGGCGACGTTTCTTTGA 654 41.9 MVRGRTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSTRGKLYEFSSRSMHKTIDRYKNRTKELEHGKKAIQENIQEEKDDQDIISMAKKIENLESSKRKLMGEGLDSCSIDELQQTEKQLEKSLSKIRTKKYQILREQIEKLKEQEGKLIEENSKLRAKSGIQPSNLEGRREGERLGRLSLEVETGLFIGPPERRTFPTTATFL 217
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 1308912 1311859 + Bda030591.2 Bda09g00067 12317
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bda09g00067 217 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bda09g00067 217 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bda09g00067 217 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bda09g00067 217 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bda09g00067 217 PANTHER MADS BOX PROTEIN 1 206 - -
Bda09g00067 217 PANTHER MADS-BOX PROTEIN SOC1 1 206 - -
Bda09g00067 217 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bda09g00067 217 SUPERFAMILY SRF-like 3 74 IPR036879 GO:0003677|GO:0046983
Bda09g00067 217 Coils Coil 123 172 - -
Bda09g00067 217 Coils Coil 66 93 - -
Bda09g00067 217 Pfam K-box region 86 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bda09g00067 217 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bda09g00067 217 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bda09g00067 217 CDD MADS_MEF2_like 3 71 IPR033896 GO:0000977|GO:0045944
Bda09g00067 217 Gene3D - 14 112 IPR036879 GO:0003677|GO:0046983
Bda09g00067 217 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00660 Bda-Chr6:9234513 Bda09g00067 Bda-Chr9:1308912 3.50E-61 dispersed
Bda09g00067 Bda-Chr9:1308912 Bda01g01197 Bda-Chr1:47235609 4.43E-45 dispersed
Bda12g00141 Bda-Chr12:1267046 Bda09g00067 Bda-Chr9:1308912 1.81E-41 dispersed
Bda14g01027 Bda-Chr14:8651581 Bda09g00067 Bda-Chr9:1308912 5.04E-29 dispersed
Bda09g00067 Bda-Chr9:1308912 Bda15g00745 Bda-Chr15:10917908 6.98E-64 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16344 PF01486 K-box 9.90E-24 No_clan Bda TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g00067 - - pop:18094432 253.832