Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda09g00067 | ATGGTGAGGGGAAGAACTCAGATGAAGAGGATAGAGAATGCAACGAGCCGGCAAGTAACTTTTTCAAAGCGTAGAAATGGGCTGCTGAAGAAAGCCTTCGAGCTATCAGTTCTTTGTGATGCTGAAGTTGCACTCATCATCTTCTCCACCAGAGGAAAACTCTATGAATTTTCCAGTCGCAGCATGCATAAGACGATAGATCGCTATAAGAACAGAACCAAGGAACTAGAGCACGGGAAAAAAGCTATTCAAGAAAATATCCAGGAAGAAAAGGATGATCAAGACATTATTAGCATGGCGAAGAAGATTGAGAATCTCGAATCTTCTAAACGAAAACTCATGGGAGAGGGCTTGGATTCATGTTCTATTGACGAACTACAACAAACAGAAAAGCAATTGGAGAAAAGCTTGAGCAAGATTAGGACAAAAAAGTATCAAATACTGAGGGAGCAGATTGAGAAGCTTAAGGAACAGGAGGGCAAATTAATAGAAGAAAATTCAAAATTACGCGCTAAGAGTGGAATTCAACCATCGAACTTAGAAGGAAGGAGAGAAGGAGAAAGGCTGGGGAGGTTAAGTTTGGAAGTGGAGACAGGATTGTTCATAGGACCACCCGAAAGACGTACATTCCCGACAACGGCGACGTTTCTTTGA | 654 | 41.9 | MVRGRTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSTRGKLYEFSSRSMHKTIDRYKNRTKELEHGKKAIQENIQEEKDDQDIISMAKKIENLESSKRKLMGEGLDSCSIDELQQTEKQLEKSLSKIRTKKYQILREQIEKLKEQEGKLIEENSKLRAKSGIQPSNLEGRREGERLGRLSLEVETGLFIGPPERRTFPTTATFL | 217 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 1308912 | 1311859 | + | Bda030591.2 | Bda09g00067 | 12317 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda09g00067 | 217 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Bda09g00067 | 217 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Bda09g00067 | 217 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Bda09g00067 | 217 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Bda09g00067 | 217 | PANTHER | MADS BOX PROTEIN | 1 | 206 | - | - | |
Bda09g00067 | 217 | PANTHER | MADS-BOX PROTEIN SOC1 | 1 | 206 | - | - | |
Bda09g00067 | 217 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Bda09g00067 | 217 | SUPERFAMILY | SRF-like | 3 | 74 | IPR036879 | GO:0003677|GO:0046983 | |
Bda09g00067 | 217 | Coils | Coil | 123 | 172 | - | - | |
Bda09g00067 | 217 | Coils | Coil | 66 | 93 | - | - | |
Bda09g00067 | 217 | Pfam | K-box region | 86 | 172 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Bda09g00067 | 217 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Bda09g00067 | 217 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Bda09g00067 | 217 | CDD | MADS_MEF2_like | 3 | 71 | IPR033896 | GO:0000977|GO:0045944 | |
Bda09g00067 | 217 | Gene3D | - | 14 | 112 | IPR036879 | GO:0003677|GO:0046983 | |
Bda09g00067 | 217 | ProSiteProfiles | K-box domain profile. | 89 | 179 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda06g00660 | Bda-Chr6:9234513 | Bda09g00067 | Bda-Chr9:1308912 | 3.50E-61 | dispersed | |
Bda09g00067 | Bda-Chr9:1308912 | Bda01g01197 | Bda-Chr1:47235609 | 4.43E-45 | dispersed | |
Bda12g00141 | Bda-Chr12:1267046 | Bda09g00067 | Bda-Chr9:1308912 | 1.81E-41 | dispersed | |
Bda14g01027 | Bda-Chr14:8651581 | Bda09g00067 | Bda-Chr9:1308912 | 5.04E-29 | dispersed | |
Bda09g00067 | Bda-Chr9:1308912 | Bda15g00745 | Bda-Chr15:10917908 | 6.98E-64 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
16344 | PF01486 | K-box | 9.90E-24 | No_clan | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda09g00067 | - | - | pop:18094432 | 253.832 |