Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g00070 ATGGCCGCTTCTAGTAGTAGCACCTACAGAAATGGCTTTTCCAGAAGCTCTCTTAAGGTCGATAAACCTCCACCTCTCAACTCCAATCCCAAGCATTCCGCCAAATCCAAGCCGCCCAACTCGTCTCTCCGCCGCAGCAGCCCCGCATCGCTCGCCAGCGTCACCGGAGATGATGCTGGAGTATCTGGAAGAGTTCGAGTAGCAGTTAGATTGCGTCCTCATATTGCGGAGGAATCGGTAGAAGATGCAGATTTTGCAGATTGTGTAGAATTACAGCCAGAGCTGAAAAGGTTGAAACTTCGAAAGAACAATTGGGATTCAGATACTTACGAATTTGATGAAGTACTAACTGAATTCGCTTCTCAAAAACGTGTTTATGAAGTCGTGGCCAAGCCTGTTGTGGAGAGTGTGTTGGATGGCTACAATGGAACAGTTATGGCATATGGACAGACTGGCACTGGTAAAACATACACTCTTGGTAGACTTGGAGAGGAAGACACGTCTGATCGAGGGATAATGGTTCGAGCTATGGAGGACATACTGGCTGATGTTTCTCCTGAGACTGATTCAGTACATGTTTCCTACTTGCAGCTTTATATGGAGACGATACAAGACCTACTCCATCCCGCAAATGACAACATTTCCATTGTGGAAGACCCAAAAACTGGAGACGTTTCTCTTCCTGGTGCTAGCCTAGTTGAAATCAGGGACCAGCAAAGTTTTGTACAATTACTACGATTAGGAGAAGCTCATCGCTTTGCTGCAAATACAAAGCTAAACACTGAATCTTCTCGTAGTCATGCCATTCTCATGGTGCACATAAGGCGGTCTATCAAGGGTAGAGATTCAGTAATTTCAAGTGAAAGTGACAGCAGTCGCATGGTCAACAAGACTTTGAAACCTCCTATTATTCGAAAAGGAAAATTAGTAGTGGTGGATTTAGCTGGTTCGGAGCGAATTGATAAGTCAGGTTTTGAAGGTCATACGCTTGAGGAAGCAAAATCTATCAATCTCTCTTTGAGTGCACTCGGAAAGTGCATAAATGCCTTAGCGGAGAATAGCATACATGTTCCATTTAGGGATTCAAAGCTCACAAGATTACTTCGAGATTCATTTGGTGGCACAGCTAGAACTTCACTTGTTATTACCATTGGTCCATCACCCCGTCATCGAGGAGAGACTGCTAGCACGATAATGTTTGGACAGCGGGCTATGAAGGTGGAAAATATGTTGAAAATAAAGGAAGAATTTGACTACAAGAGTTTATCTAGGAGGCTTGATATACAATTAGACAAACTAATTGCAGAACATGAGAGACAGCGAAAGGCATTTGAAGATGAAATTCAAACGATTACGTTAGAAGCACAAAATCAAATTTCTGAGGCTGAGAAAAACTATGCAAATGCACTTGAAAGGGAAAGATTGAAATATCAGAAAGACTATAAGGAATCAATAAGGAAGCTTGAAGATCAGTTGGTTATGAATCATCGAAAGTATGGCGGAGGAAAAATCATTAACGAATTCAAGAACGATGGCACTAATGTGATAACTAATGGAGAGAGTTCTGCAATTCATGCAGTCGATGAAGTTGCTGAGCTTCAGCAGTTACATCAGAAAGAAGCTCTTAGGAGAAAAGCTGCAGAAGAGGAGATCATTAATCTTAAGAGTCAGCTAAATCAGTCCAAAAGGACAGAGGAGGCTGGAAATTTAGAGATATTGAATCTTCGCAAGAGGCTCGACGAGGAGGCAAACAAGAAAACAAAACTTGAAGGAGACATAGCAATACTACAAAGCCAATTACTGCAACTGAGCTTTGAAGCAGATGAGACACGAAGGCAACTAGACAAAAGCGAGTCCGGGAGAGTTTTGGGTGCCCTAGATTCTCTCATGTCTCAATCTATGCGTCCTCAATCAAAAGATGGGGGAAATGGGGATAAAGCCTCAGTAGCAAAACTCTTTGAGCAAGTGGGACTACAGAAGATCTTGTCATTGCTTGAAGCCGAGGATTATGATGTGAGAATTCATGCTGTCAAAGTGGTAGCCAATCTAGCTGCTGAAGAAACAAATCAGCAGAAGATTGTAGAGGCTGGTGGTCTCACGTCTTTACTGATGCTGCTTAAAAGCTCTGAGGACGAGACTATCCATCGAGTTGCTGCTGGTGCAATTGCAAACCTGGCAATGAATGAAACCAACCAAGAGCTCATAATGGCTCAAGGAGGCATTGGTTTACTGTCCATGACTGCAGCTAATGCCGAGGATCCTCAAACCCTACGAATGGTTGCCGGAGCAATTGCTAATCTTTGTGGCAATGGTAATTTTTTTTTCTATAAATTGCAGGTCAAGTTAAGGGTTGAAGGTGGTATCAAGGCATTGTTGGGTATGGTTAGAAGTAGGCATCCTGATGTTCTTGCACAAGTTGCTCGAGGAATAGCAAATTTTGCTAAGTGTGAGTCGAGAGCATCTACACAAGGAACTAAAACTGGAAGATCTTTCTTGATTGAGGATGGCACGCTTCCATGGATTGTTCAGAATGCTAATAATGAAGCATCCACAATCAAGCGACATATTGAGCTTGCTCTCTGTCACTTAGCTCAACATGAAGTGAATGCAAAAGACATGATTAGTGGGGGTGCCTTATGGGAGCTTGTACGCATAGCTCGCGACTGTTCACGAGAAGACATAAGAAATCTCGCCCATCGAACTTTAAATTGCAGTCCAGCCTTCCAAGCCGAACTCCGGCGATTACGGATCGATTGGTGA 2760 43.19 MAASSSSTYRNGFSRSSLKVDKPPPLNSNPKHSAKSKPPNSSLRRSSPASLASVTGDDAGVSGRVRVAVRLRPHIAEESVEDADFADCVELQPELKRLKLRKNNWDSDTYEFDEVLTEFASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTYTLGRLGEEDTSDRGIMVRAMEDILADVSPETDSVHVSYLQLYMETIQDLLHPANDNISIVEDPKTGDVSLPGASLVEIRDQQSFVQLLRLGEAHRFAANTKLNTESSRSHAILMVHIRRSIKGRDSVISSESDSSRMVNKTLKPPIIRKGKLVVVDLAGSERIDKSGFEGHTLEEAKSINLSLSALGKCINALAENSIHVPFRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGETASTIMFGQRAMKVENMLKIKEEFDYKSLSRRLDIQLDKLIAEHERQRKAFEDEIQTITLEAQNQISEAEKNYANALERERLKYQKDYKESIRKLEDQLVMNHRKYGGGKIINEFKNDGTNVITNGESSAIHAVDEVAELQQLHQKEALRRKAAEEEIINLKSQLNQSKRTEEAGNLEILNLRKRLDEEANKKTKLEGDIAILQSQLLQLSFEADETRRQLDKSESGRVLGALDSLMSQSMRPQSKDGGNGDKASVAKLFEQVGLQKILSLLEAEDYDVRIHAVKVVANLAAEETNQQKIVEAGGLTSLLMLLKSSEDETIHRVAAGAIANLAMNETNQELIMAQGGIGLLSMTAANAEDPQTLRMVAGAIANLCGNGNFFFYKLQVKLRVEGGIKALLGMVRSRHPDVLAQVARGIANFAKCESRASTQGTKTGRSFLIEDGTLPWIVQNANNEASTIKRHIELALCHLAQHEVNAKDMISGGALWELVRIARDCSREDIRNLAHRTLNCSPAFQAELRRLRIDW 919
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1363320 1375331 - Bda030596.1 Bda09g00070 12320

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g00070 919 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 656 698 IPR000225 GO:0005515
Bda09g00070 919 Coils Coil 530 564 - -
Bda09g00070 919 MobiDBLite consensus disorder prediction 29 53 - -
Bda09g00070 919 PRINTS Kinesin heavy chain signature 357 378 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bda09g00070 919 PRINTS Kinesin heavy chain signature 140 161 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bda09g00070 919 PRINTS Kinesin heavy chain signature 257 274 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bda09g00070 919 PANTHER KINESIN-RELATED 47 911 IPR027640 GO:0003777|GO:0007018
Bda09g00070 919 MobiDBLite consensus disorder prediction 1 57 - -
Bda09g00070 919 MobiDBLite consensus disorder prediction 1 15 - -
Bda09g00070 919 Pfam Kinesin motor domain 70 407 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bda09g00070 919 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 697 740 IPR000225 GO:0005515
Bda09g00070 919 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 442 IPR027417 -
Bda09g00070 919 SMART kinesin_4 62 415 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bda09g00070 919 ProSiteProfiles Kinesin motor domain profile. 64 407 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bda09g00070 919 Coils Coil 572 599 - -
Bda09g00070 919 Gene3D - 750 915 IPR011989 -
Bda09g00070 919 ProSitePatterns Kinesin motor domain signature. 307 318 IPR019821 GO:0003777|GO:0005524|GO:0007018
Bda09g00070 919 Gene3D Kinesin motor domain 56 437 IPR036961 -
Bda09g00070 919 SUPERFAMILY ARM repeat 643 903 IPR016024 -
Bda09g00070 919 SMART arm_5 776 815 IPR000225 GO:0005515
Bda09g00070 919 SMART arm_5 646 685 IPR000225 GO:0005515
Bda09g00070 919 SMART arm_5 686 727 IPR000225 GO:0005515
Bda09g00070 919 SMART arm_5 728 769 IPR000225 GO:0005515
Bda09g00070 919 Gene3D - 643 749 IPR011989 -
Bda09g00070 919 PANTHER KINESIN-LIKE PROTEIN KIN-UA 47 911 IPR033291 GO:0008017|GO:0032886|GO:0048364
Bda09g00070 919 Coils Coil 434 487 - -
Bda09g00070 919 CDD KISc 64 405 - -
Bda09g00070 919 Pfam Armadillo/beta-catenin-like repeat 689 726 IPR000225 GO:0005515
Bda09g00070 919 MobiDBLite consensus disorder prediction 627 646 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g00070 - - K10396 csv:101209471 1376.3
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda06g00057 Bda09g00070 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda09g00070 Bda-Chr9:1363320 Bda15g00393 Bda-Chr15:6847766 9.62E-97 dispersed
Bda11g01701 Bda-Chr11:51205024 Bda09g00070 Bda-Chr9:1363320 5.94E-22 transposed
Bda13g00422 Bda-Chr13:5160428 Bda09g00070 Bda-Chr9:1363320 1.79E-146 transposed
Bda13g00423 Bda-Chr13:5168949 Bda09g00070 Bda-Chr9:1363320 7.76E-64 transposed
Bda06g00057 Bda-Chr6:597554 Bda09g00070 Bda-Chr9:1363320 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g462 . . Bda06g00057 . . . Bma07g01621 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00360 . . . . . Bda09g00070 . . . . . . . . . . . . Cpe13g00198 Bhi12g00357 . . . . . Lcy12g1744 Cla01g00338 Cam01g0351 Cec01g0347 Cco01g0359 Clacu01g0355 Cmu01g0335 Cre09g2175 Lsi09g00364 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001054 3 5 3 2 3 2 5 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 5 2 3 80
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda09g00070 Bda_Chr09 FPKM 1.334951 1.587459 3.059017 2.13324 7.706382 7.377894 9.446854 0.917391 1.046639