Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g00071 ATGAAATTGAAATCCCTGCATCTCGAATCACCGAAGTCATCCGATCATGACAATCAGACGATAGTTGTTCTTCCAACACCTCCAGTGGAGCCCTCTACTGGTTCATCTTCTTCTTCTTCCGATCAATCAGAGCCACCGAAAACTCGGAACCGGTGCCTGAGCTGTAACAAAAAGGTGGGATTGACGGGTTTTGTATGCAAGTGCGGTAGCACGTATTGTGGCACACATCGTCATCCGGAGAAGCATGGTTGTCCCTTTGATTTTAAGGGACTTGGTCGGGATGAAATCGCCAAGGCAAATCCAGTGGTGAAGGCTGATAAGGTGGAGAGGTTCTGA 336 48.21 MKLKSLHLESPKSSDHDNQTIVVLPTPPVEPSTGSSSSSSDQSEPPKTRNRCLSCNKKVGLTGFVCKCGSTYCGTHRHPEKHGCPFDFKGLGRDEIAKANPVVKADKVERF 111
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1389021 1389356 - Bda030598.1 Bda09g00071 12321

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g00071 111 SUPERFAMILY AN1-like Zinc finger 37 106 IPR035896 -
Bda09g00071 111 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 1 31 111 - -
Bda09g00071 111 MobiDBLite consensus disorder prediction 15 50 - -
Bda09g00071 111 Gene3D - 29 107 IPR035896 -
Bda09g00071 111 PANTHER AN1-TYPE ZINC FINGER PROTEIN 31 111 - -
Bda09g00071 111 SMART AN1_Zf_4 52 89 IPR000058 GO:0008270
Bda09g00071 111 Pfam AN1-like Zinc finger 54 88 IPR000058 GO:0008270
Bda09g00071 111 MobiDBLite consensus disorder prediction 1 50 - -
Bda09g00071 111 ProSiteProfiles Zinc finger AN1-type profile. 46 92 IPR000058 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g00071 - - - ath:AT1G12440 124.79
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda09g00071 Bda-Chr9:1389021 Bda03g00713 Bda-Chr3:6051380 2.31E-30 dispersed
Bda09g00071 Bda-Chr9:1389021 Bda01g00327 Bda-Chr1:28581658 2.99E-31 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g463 . . . . . . Bma07g01620 . . . . Cma15g01177 . Car15g01065 . . Cpe05g00274 . . . . . . . . . . . . . . . . . . . . Chy09g01148 . . . . Bda09g00071 . . . . . . Cmo15g01238 . . . . . . . . . . . . . . . . . . . . . . . Cme09g01680
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005235 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 4 2 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda09g00071 Bda_Chr09 FPKM 39.706421 47.926628 36.905777 44.212639 66.010353 68.430443 60.433838 84.645226 90.884453