Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g00089 AGAATGGCTTCCATCAGCTTCCTATCGGTTATTCTTATCCACATTTGCTTTTTTGTGAGTTTGTGTTTTGCTTTGGATCCGTTTGTTAGCTATGATTTTGTGGTCTCTTACATCACTGCCTCTCCTTTGGGAGTTATTGCCATTAACGGCAAGTTTCCTGGTCCAAGTATTAATGTGACTACTAACTATAATGTAGCAATCAATGTCAAGAACAAGTTGGACGAGAACCTCCTTCTCCATTGGTCCGGAATTCAGCAAAGGCGGAGTTGTTGGCAAGATGGACTTCTTGGTACTAATTGTCCTATTCCTCCAAAGTGGAATTGGACATACCAATTTCAGGTGAAGGATCAAGTAGGGAGTTTCTTCTACTTTCCTTCACTGAATTTTCAGAGAGCTTCTGGCGGGTATGGTGGGTTCATTATAAACAACAGGGAAATCATTCCCATTCCTTTTGCAACCCCGGATGGAGATATCACGATTATGATCGGCGATTGGTATACTCGGAATCACACGGCTTTGAGGAAGACTCTCGATGAAGGGAAAAGCCTTGGGATACCCAATGGTGTTCTTATTAATGGTAAAGGTCCTTATCGCTACAACGACACTCTTGTACCAAAAGGAATTGACCATGAAACGATTGAAGTCCACCCAGGGAAAACTTACCGAATCCGAGTACACAACGTTGGAATATCAACTAGTCTAAATTTCAGGATTCAGAATCATAATCTTCTTCTGGTAGAGACAGAAGGATCATACACCGTTCAACAGGAATATACGAGCTTGGATATCCACGTAGGACAATCTTATTCGTTTTTGGTAACCACGGATCAGAATGCTAGTACTGATTACTACATTGTAGCTAGTGCCAGGTTTGTGAATGAATCACTTTGGAAAAGAGTTACTGGGGTTGGCATCTTGCGATATTCCAATTCCAAAGGAAAGGCCACCGGGCCTCTCCCTCCTGCACCGAATGATGAGTTTGACAAAACTTTCTCCATGAACCAGGCTAGATCAATCAGATGGAATGTATCAGCTAGTGGTGCACGGCCTAATCCGCAAGGCTCTTTTCGGTACGGGTCGATTACTGTGACCGAAATTTACGTGTTGAAGAACATACCAGCAATGGCTATCGACGGGAAAAATCGCACAACTCTGAGCGGGATTTCGTTTGTTAATCCTGCTACACCTATCAGACTAGCCGACCAATTCAAAGTAAAAGGAGTGTACAAGCTTGACTTTCCCACGAAACCCATTGAAGGAGAGCCAAAAATAGAAACATCGGTTATTAATGGAACATACAAAGGATTCATGGAGGTTATCTTGCAGAATAATGATACTAACGTTCAGAGCTACCATATGAGTGGATATGCTTTTTTTGTTGCCGGCATGGACTATGGGGAATGGTCGGAGAACAGCCGAGGTACGTATAATAAGTGGGACGGAATAGCTCGATCAACTGTACAGGTTTATCCGGGTGCATGGACTGCAATTTTGATCTCTCTTGACAATGTCGGAATCTGGAACCTTAGAACAGAAAACCTCGATTCATGGTACCTCGGACAAGAGACTTATGTCCGTGTCGTTAATCCGGAAGCGACAAATAAAACCGAGTTGCCTTTACCCGACAATGCCCTCTTTTGCGGTGCACTCAGCAAACTACAAAAG 1665 43.24 RMASISFLSVILIHICFFVSLCFALDPFVSYDFVVSYITASPLGVIAINGKFPGPSINVTTNYNVAINVKNKLDENLLLHWSGIQQRRSCWQDGLLGTNCPIPPKWNWTYQFQVKDQVGSFFYFPSLNFQRASGGYGGFIINNREIIPIPFATPDGDITIMIGDWYTRNHTALRKTLDEGKSLGIPNGVLINGKGPYRYNDTLVPKGIDHETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQEYTSLDIHVGQSYSFLVTTDQNASTDYYIVASARFVNESLWKRVTGVGILRYSNSKGKATGPLPPAPNDEFDKTFSMNQARSIRWNVSASGARPNPQGSFRYGSITVTEIYVLKNIPAMAIDGKNRTTLSGISFVNPATPIRLADQFKVKGVYKLDFPTKPIEGEPKIETSVINGTYKGFMEVILQNNDTNVQSYHMSGYAFFVAGMDYGEWSENSRGTYNKWDGIARSTVQVYPGAWTAILISLDNVGIWNLRTENLDSWYLGQETYVRVVNPEATNKTELPLPDNALFCGALSKLQK 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1759852 1763028 - Bda034073 Bda09g00089 12339

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g00089 555 PANTHER MULTI-COPPER OXIDASE 13 551 IPR045087 -
Bda09g00089 555 SUPERFAMILY Cupredoxins 26 170 IPR008972 -
Bda09g00089 555 SUPERFAMILY Cupredoxins 375 548 IPR008972 -
Bda09g00089 555 Gene3D - 27 143 IPR008972 -
Bda09g00089 555 Pfam Multicopper oxidase 157 310 IPR001117 -
Bda09g00089 555 SUPERFAMILY Cupredoxins 151 350 IPR008972 -
Bda09g00089 555 Gene3D - 155 348 IPR008972 -
Bda09g00089 555 PANTHER MONOCOPPER OXIDASE-LIKE PROTEIN SKS1 13 551 - -
Bda09g00089 555 Pfam Multicopper oxidase 45 145 IPR011707 GO:0005507
Bda09g00089 555 Pfam Multicopper oxidase 397 530 IPR011706 GO:0005507|GO:0016491
Bda09g00089 555 CDD CuRO_1_AAO_like_1 29 142 IPR034273 GO:0005507
Bda09g00089 555 Gene3D - 361 554 IPR008972 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g00089 - - - qsu:112020344 1024.23
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00445 Bda-Chr4:52511453 Bda09g00089 Bda-Chr9:1759852 0 dispersed
Bda06g00744 Bda-Chr6:10131887 Bda09g00089 Bda-Chr9:1759852 0 dispersed
Bda07g00007 Bda-Chr7:118627 Bda09g00089 Bda-Chr9:1759852 5.36E-34 dispersed
Bda09g00089 Bda-Chr9:1759852 Bda09g00341 Bda-Chr9:4353813 9.28E-177 dispersed
Bda14g00370 Bda-Chr14:2679610 Bda09g00089 Bda-Chr9:1759852 6.53E-97 dispersed
Bda09g00089 Bda-Chr9:1759852 Bda04g00301 Bda-Chr4:46309840 5.30E-179 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g496 . . . . . . Bma07g01605 . . . . Cma15g01148 . Car15g01043 . . . . . . . . . . . . . . . . . . . . . . Csa05g00396 Chy09g01117 . . Blo19g00222 . Bda09g00089 Bpe08g01440 . . . . . Cmo15g01208 . . . . . Cpe13g00220 . . . . . . . Cla01g00369 Cam01g0389 Cec01g0382 Cco01g0400 Clacu01g0388 Cmu01g0369 Cre09g2141 Lsi09g00399 . . Cme09g01647
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000359 4 3 4 4 4 4 5 4 4 4 5 4 5 4 4 5 4 6 5 4 4 4 4 4 4 5 4 8 5 2 130
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda09g00089 Bda_Chr09 FPKM 51.755749 55.887077 50.279106 52.998264 73.023735 82.705795 73.547295 44.577068 45.45298