Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g00108 ATGGGTACCGCGATTTGCATGAATGCTTCTTGTGGGGTGACCACCTACAACGACGGCAAAAGAGGATGGCCTCTACGATCCGGCGGATTTGCACTTCTGTGCCATAAGTGCGGATCTGCTTATGAGAGTTTAATATTCTGTGACACGTTTCACTTAGAAGAAACTGGTTGGAGGGATTGCAGTTTATGTGGCAGGCATATCCACTGTGGATGTATAGCCTCTAAGTCTTTGTTTGAGTGCCTTGATTATGGGGGCGTTGGTTGTATTACCTGCATGAAAGGTTCTCAATTCCATCTGATTCAGAGGGGTGAAGTTCCCAATGGATTTGGTACATTGATGACAATGCAAAATGTTGGTGATTTTCAGTCTACTTCAGTTGAAAATAGTGTTAATGGTGATATTGGTGATGAAAATCTTTTGAAGTTGTGTAAAATCGTTGAGGCCAATGGAAACAGCCTCCTATCCCCATCTCGGAGAGTTGACATAAGTGCTGGTCAAAGCATAAGAGAAAACATTAGGAGCACATTTGGAGAAGCTGGCACACGCTCTTCAAATGTTATACAATCATCTCTTAAATCATCACCATATGAAAATCCTGAGAGTAGTAAATTCTTCACAGAGGTTAAAAACATTGAAGAATCTCTTGCTCAACCATCCTTAAGTATGAATTTAGGTGCTCCATCGACATTGCATAACTTGGTACTTCCGTTTTCTTGTGGAGCTGTAGAAGCGAGAGAACAGGGAAAAGTACCGTATCCTTTTCAACAGAGCCAAAGATCTCGCCCATTATTGCCTAAGCCACTGAAAAGCAGCGCTACTCCTACAAATTCAGAGCCAAACAAAACCATGATTCGTCATTTGCGAATTGCTAGACCTCCTGCCGAAGGGCGTGGAAAGAACCAACTACTTCCCCGATACTGGCCAAGGATAACAGATCAAGAGCTGGAGCAACTGTCTGGAGACTTGAATTCCACGATTGTTCCACTATTTGAAAAGGTGTTGAGTGCTAGTGATGCTGGTCGTATTGGTCGTTTAGTTCTTCCCAAAGCATGTGCTGAAGCTTATTTTCCTCCTATTTCTCAATCAGAAGGTCTTCCAATAAGGATTCAAGATGTTAAGGGAAATGAGTGGACATTTCAGTTCAGATTTTGGCCAAACAACAACAGTAGGATGTATGTTTTGGAGGGTGTTACTCCTTGCATACAGTCTATGCAATTACGAGCTGGTGATACTGTCATCTTTAGCCGGATAGATCCTGAAGGCAAACTTGTCATTGGGTTTCGAAAAGCAACAAACTCTATAGATCTGCAGAGATCATACACACAGGATGGTCAGACCCCTGTCCTTGCGAATGGTTCTCACTTTGGCGAACCATCATTTTCTAGCATCATGGATAATTTGCAAACTGAAGGTGGTAACATTAGTCCTGATGTCATTATTGTAACAGAGTATTTTTGTTTAGCAGATGGAGATTTGCACAAGTTAGAGAACCATGGCGATAGCACAAATGACAACCAACTGCAGCAACAAATGCCAGTTGTGGAGAAGAAAAGAGCTCGAAACATAGGGCCAAAAAATAAGAGGTTGCTCATGCATAGTGAGGATGCCCTGGAATTGAGACTGACATGGGAAGAAGCACAGGACTTACTTCGGCCACCACCGAGGGCAAAGCCTATCATTGTTACCATTGAGGACCATGACTTTGAAGAGTATGATGAACCTCCTATTTTTGGTAAGAGGACTATATTCACTGCTGACTCATCCAATAGGAGTCAGGAGCAATGGGCTCAGTGTGATGACTGCTCAAATTGGCGAAAATTGCCGGTCGATGTTCTTCTGCCTTCAAAGTGGACTTGTTTGGATAACATTTGGGATTCTAACAGGTGTTCATGTTCTGAACCAGAAGAAATAAATCCAAAGGAGTTGCACAATCTTCTCAGAGCAAAAAAAGACCATACAAAGAGAAGAATAGTGGAAAAGCAGGAGCCATCTCTTGAAGTTGAGGCATCTGGATTAGATGCTCTGGCGAGTGCTGCAGTTCTAGGAGATTATGTGGGTAACTTGCTTGAGCCAGCAGTTGGAGCTACCACTAAACATCCCCGACATCGCCCAGGATGCAGTTGCATTGTGTGTATTCAGCCACCGAGTGGGAAGGGAAAGCACAAAACCACATGCACATGCAATGTATGTCTGACTGTGAAGCGACGTTTTAAGACCCTAATGTTACGAAAGAAGAAACGGCAATCAGAACGTAATTCAGAGAAAGAAGTAGACATGGATGGTGGCGTATGCAGAGATGCAGCCGTGCAGGCAAATGAGTCGGCCAACCAAGAAAGGCAGAGCAGAATGGAAGGTGATGCGGGTGAAAATAGCAACGGAAAAATAGACTTGAATTGCGACCCAGATCGAGAAGAGGTGCGAGAAGAGGCGACGGCGGGATCAAGCCTGGTTCAATCCGACAGCCTTCCCTTGGATAGAATCGAAAGGCACAATGGAGTGTCCGGGTTGATCGGCGAGGAAGATGTTATGGTCCCATCAAGCTCTGGACAAAGCGTGCCTCAATTACACCTCTAG 2574 44.17 MGTAICMNASCGVTTYNDGKRGWPLRSGGFALLCHKCGSAYESLIFCDTFHLEETGWRDCSLCGRHIHCGCIASKSLFECLDYGGVGCITCMKGSQFHLIQRGEVPNGFGTLMTMQNVGDFQSTSVENSVNGDIGDENLLKLCKIVEANGNSLLSPSRRVDISAGQSIRENIRSTFGEAGTRSSNVIQSSLKSSPYENPESSKFFTEVKNIEESLAQPSLSMNLGAPSTLHNLVLPFSCGAVEAREQGKVPYPFQQSQRSRPLLPKPLKSSATPTNSEPNKTMIRHLRIARPPAEGRGKNQLLPRYWPRITDQELEQLSGDLNSTIVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISQSEGLPIRIQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDTVIFSRIDPEGKLVIGFRKATNSIDLQRSYTQDGQTPVLANGSHFGEPSFSSIMDNLQTEGGNISPDVIIVTEYFCLADGDLHKLENHGDSTNDNQLQQQMPVVEKKRARNIGPKNKRLLMHSEDALELRLTWEEAQDLLRPPPRAKPIIVTIEDHDFEEYDEPPIFGKRTIFTADSSNRSQEQWAQCDDCSNWRKLPVDVLLPSKWTCLDNIWDSNRCSCSEPEEINPKELHNLLRAKKDHTKRRIVEKQEPSLEVEASGLDALASAAVLGDYVGNLLEPAVGATTKHPRHRPGCSCIVCIQPPSGKGKHKTTCTCNVCLTVKRRFKTLMLRKKKRQSERNSEKEVDMDGGVCRDAAVQANESANQERQSRMEGDAGENSNGKIDLNCDPDREEVREEATAGSSLVQSDSLPLDRIERHNGVSGLIGEEDVMVPSSSGQSVPQLHL 857
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1959470 1966371 - Bda030643.2 Bda09g00108 12358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g00108 857 ProSiteProfiles B3 DNA-binding domain profile. 330 431 IPR003340 GO:0003677
Bda09g00108 857 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 4 834 - -
Bda09g00108 857 SMART B3_2 330 431 IPR003340 GO:0003677
Bda09g00108 857 Pfam CW-type Zinc Finger 594 637 IPR011124 GO:0008270
Bda09g00108 857 Gene3D - 308 435 IPR015300 -
Bda09g00108 857 MobiDBLite consensus disorder prediction 796 810 - -
Bda09g00108 857 ProSiteProfiles Zinc finger CW-type profile. 589 639 IPR011124 GO:0008270
Bda09g00108 857 CDD B3_DNA 328 429 IPR003340 GO:0003677
Bda09g00108 857 MobiDBLite consensus disorder prediction 746 762 - -
Bda09g00108 857 MobiDBLite consensus disorder prediction 251 279 - -
Bda09g00108 857 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 4 834 - -
Bda09g00108 857 Gene3D - 584 638 - -
Bda09g00108 857 SUPERFAMILY DNA-binding pseudobarrel domain 327 433 IPR015300 -
Bda09g00108 857 MobiDBLite consensus disorder prediction 742 857 - -
Bda09g00108 857 Pfam B3 DNA binding domain 330 430 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01443 Bda-Chr3:51914796 Bda09g00108 Bda-Chr9:1959470 0 dispersed
Bda09g00108 Bda-Chr9:1959470 Bda12g00689 Bda-Chr12:33397373 1.32E-15 dispersed
Bda09g00108 Bda-Chr9:1959470 Bda05g01144 Bda-Chr5:59629321 8.79E-16 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16351 PF02362 B3 2.10E-16 CL0405 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g00108 - - pvy:116138510 1035.4