Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g00117 ATGGTGACGAATGAGGAGGCCGAGCTGGTTTGCGTCACTGGTGGCAGCGGCTGTATTGGATCCTGGCTCGTCCACCTCCTTCTCCTCCGTGGATACTCCGTCAACGCCACCGTCCGGAATCTCCAGGATGAGAGGGAAACGAAGCATCTGGAAGCGTTAGAGGGAGCAGATACACGTCTCCGTCTCTTTCAGATGGACCTGCTCCACTACGACTCCATCGTCCCCGCCGTCACTGGATGCGCCGGCGTCTTTCACTTAGCCTCTCCCTGCATCGTAGATCAAGTCCAAGATCCCGAGAAAGTGCTGTTGGATCCAGCTGTCAAAGGAACCATTAACGTCCTCACAGCAGCTAAAGAAGCAGGGGTCAGACGAGTGGTGGTGACCTCGTCCATCACCGCCATCAGTCTGAATCCTCACTGGCCGCAAGACGTTATCAAGGGAGAAGATTGCTGGACCGACGTCGATTACTGCAAACAGAAGGAATTATGGTACCCAGTTTCAAAAACTATGGCGGAAAAATGTGCTTGGAAGTTCGCCGAGGAGAAGAATCTGGACGTGGTAGTGGTAAATCCAGGCAGAGTAATGGGCCCTGTTATTCCTCCGACACTCAACGCTAGCATGTTGATGCTTTTACGCCTTCTCCAAGGGCGAACTGAAACGTACGATGAGTTCTACATGGGGTGTGTTCATTTCAAAGACGTAGCGCAGGCGCATATTTTAGTGTACGAAATCAAATCAGCAACCGGCAGGCATTTGTGCGTCGAAGCTGTATCTCCTTACGCTGACTTCGTATCCATGACTGCTGAGCTTTATCCTGAATATAAGCTGCCCACTTTGGCGAAGGAGGCGAACCCAGGGGTGTTGAAGGCAAAGAATGGACCTAAGAAGCTGACGGAGCTAGGGCTGCAGTTCATTCCAGTGGAGCAGATCATCAAGGAGGCCGTCCAGAGTCTGAAGAGCAGGGGTTTCATTTCTTAA 978 52.04 MVTNEEAELVCVTGGSGCIGSWLVHLLLLRGYSVNATVRNLQDERETKHLEALEGADTRLRLFQMDLLHYDSIVPAVTGCAGVFHLASPCIVDQVQDPEKVLLDPAVKGTINVLTAAKEAGVRRVVVTSSITAISLNPHWPQDVIKGEDCWTDVDYCKQKELWYPVSKTMAEKCAWKFAEEKNLDVVVVNPGRVMGPVIPPTLNASMLMLLRLLQGRTETYDEFYMGCVHFKDVAQAHILVYEIKSATGRHLCVEAVSPYADFVSMTAELYPEYKLPTLAKEANPGVLKAKNGPKKLTELGLQFIPVEQIIKEAVQSLKSRGFIS 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2018990 2020430 + Bda030652.5 Bda09g00117 12367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g00117 325 Gene3D - 1 325 - -
Bda09g00117 325 Pfam NAD dependent epimerase/dehydratase family 10 244 IPR001509 -
Bda09g00117 325 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 8 316 - -
Bda09g00117 325 CDD FR_SDR_e 10 302 - -
Bda09g00117 325 PANTHER CINNAMOYL-COA REDUCTASE-LIKE PROTEIN 8 316 - -
Bda09g00117 325 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 9 318 IPR036291 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda09g00117 Bda-Chr9:2018990 Bda09g01341 Bda-Chr9:45165584 4.81E-91 dispersed
Bda11g00952 Bda-Chr11:9283998 Bda09g00117 Bda-Chr9:2018990 2.48E-49 dispersed
Bda09g00117 Bda-Chr9:2018990 Bda09g00123 Bda-Chr9:2070067 0 proximal
Bda06g00177 Bda-Chr6:2457941 Bda09g00117 Bda-Chr9:2018990 1.87E-98 transposed
Bda07g01535 Bda-Chr7:28467068 Bda09g00117 Bda-Chr9:2018990 8.85E-52 transposed
Bda07g00526 Bda-Chr7:6745111 Bda09g00117 Bda-Chr9:2018990 1.54E-134 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g00117 - - rcu:8266548 503.442